RNA id: AMCG00008992


Basic Information

Item Value
RNA id AMCG00008992
length 549
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00008992
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16970232 ~ 16989426 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCGTCCGTGGTGGAGCAGCTGCTGGCCACAGTAGTGAGGCTACAGGTGCAGCAGCAACAGACCCTGGAGATGCTGGCACAGCAAGTCCGAGCACCAGCTCCTGCACTTAACCCTTATGTGGCCGCAATGAACCCGCAGGCCGGCTCATTCCTGAGTCGATCTCTGCTGTACAACAGCTGGGACTTTGAGCTGATAGTCCCTGGTAATCTGGAGAGAGAGTGCATAGAGGAGCAGTGTACCTATGAGGAGGCCAGAGAGGTGTTCGAGGACGATGCCAAGACTGTGAGAGATAGGGATGAAGGGgggagggatggggggagggggagtaggaaagggagagggggagaagaggATGTCTCTGCCCCCCTGCCCAAGCCCCACTCGGTGCTGGCTGGTGCTGAGCTTGGGGAAGCTGTGACCGTGCTGTGGAATCTGGGGCAGATAGCACCTCTGACCTGTGCCACCACAGCCCCACACTGGCTTCACAggtgtctgtctcactctcacTGTCTTGTTGATCGATCGTCTTGGTCCCTGTGGTAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66464 lncRNA downstream 132669 16833331 ~ 16837563 (-) True G53102
TU66457 lncRNA downstream 219615 16747851 ~ 16750617 (-) True G53096
TU66385 lncRNA downstream 241040 16673709 ~ 16729192 (-) True G53042
TU66334 lncRNA downstream 428677 16541268 ~ 16541555 (-) True G52999
TU66274 lncRNA downstream 607353 16362622 ~ 16362879 (-) True G52944
TU66498 lncRNA upstream 12584 17002010 ~ 17002218 (-) True G53127
TU66505 lncRNA upstream 50681 17040107 ~ 17040680 (-) True G53134
TU66513 lncRNA upstream 71382 17060808 ~ 17061551 (-) True G53142
TU66518 lncRNA upstream 92252 17081678 ~ 17082065 (-) True G53147
TU66529 lncRNA upstream 119635 17109061 ~ 17109711 (-) True G53156
AMCG00008989 mRNA downstream 105808 16823795 ~ 16864424 (-) True AMCG00008989
AMCG00008987 mRNA downstream 186210 16782779 ~ 16784022 (-) True AMCG00008987
AMCG00008980 mRNA downstream 450666 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008975 mRNA downstream 631524 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008976 mRNA downstream 647601 16319368 ~ 16322631 (-) True AMCG00008976
AMCG00008994 mRNA upstream 215664 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008998 mRNA upstream 612406 17601832 ~ 17611358 (-) True AMCG00008998
AMCG00009000 mRNA upstream 626302 17615728 ~ 17626783 (-) True AMCG00009000
AMCG00008999 mRNA upstream 666169 17655595 ~ 17664736 (-) True AMCG00008999
AMCG00009001 mRNA upstream 735293 17724719 ~ 17741782 (-) True AMCG00009001
TU66472 other downstream 56933 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 355771 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 565106 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 896297 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 1006615 15957667 ~ 15963617 (-) True G52834
TU66702 other upstream 747163 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 878960 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 3211321 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 3263478 20252904 ~ 20264085 (-) False G53809
TU67499 other upstream 5193662 22183088 ~ 22183565 (-) True G54003

Expression Profile