RNA id: AMCG00008995



Basic Information


Item Value
RNA id AMCG00008995
length 615
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00008995
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17330892 ~ 17343676 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCACGACGGCGCTATCTCCGGCGGAGCTCCAGAGACCGTCTTGTTTGCACTTCCGCTCACCGTCTTCCTGCATTGCTTTGATGACATCGTCGCGCCGCTCTCGGTTGCCAATGCTCACATGAGAAAGagctggaTTCCCAAAATCATTCGTAAAAGAGTCTGTAGCAGCTTCATAGAGGACACTTTCAGTAATGGTGCTATGTGCCAGTGTGGCAATAAGAGGGAGGACCATGAGCCCGTGGCGATGGAGGATAATTTTGGCGCTGCCATCGTGAGCCGCTGGGACTCGGCACAGCACTCTACTGAGGTGCCCACTGATGCCTTCGGGGAGGTGGAGTTTGCCGGCGCTGGCAAGAGACAGAGCCATtTCCTGCGGCTGTCCTGCGACAGTGATCCCCAGGTGGTGTACAACATCATGACAACGTCCTGGGCCCTGCCCCTACCCAACCTGGTGGTCTCAGTGGTAGGGGGGGAGGGACGGGCCAAAATGAAGAGCTGGGTGAAGGATGTCCTGAGACAGGGGCTGGGTGCAATGCCCAGTGCCACAACCTGGGCGATGCCCTGGGAGCTGGAGCTGGCGGTGGCATGGTCCCTCACTGCTTCACCCACATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66555 lncRNA upstream 15498 17320970 ~ 17321222 (+) True G53180
TU66553 lncRNA upstream 18210 17318291 ~ 17318510 (+) True G53178
TU66551 lncRNA upstream 25052 17311468 ~ 17311668 (+) True G53176
TU66530 lncRNA upstream 223712 17112116 ~ 17113008 (+) True G53157
TU66528 lncRNA upstream 227036 17109079 ~ 17109684 (+) True G53155
TU66601 lncRNA downstream 183543 17527219 ~ 17527433 (+) True G53223
TU66603 lncRNA downstream 183802 17527478 ~ 17613616 (+) True G53224
TU66640 lncRNA downstream 283222 17626898 ~ 17628315 (+) True G53254
TU66641 lncRNA downstream 294485 17638161 ~ 17638374 (+) True G53255
TU66678 lncRNA downstream 330938 17674614 ~ 17685760 (+) True G53290
AMCG00008993 mRNA upstream 175179 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008990 mRNA upstream 494002 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00008991 mRNA upstream 538191 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00008986 mRNA upstream 588327 16746687 ~ 16748393 (+) False AMCG00008986
AMCG00008988 mRNA upstream 599221 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008996 mRNA downstream 79770 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008997 mRNA downstream 148805 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009003 mRNA downstream 444844 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00009005 mRNA downstream 475924 17819600 ~ 17829383 (+) True AMCG00009005
AMCG00009004 mRNA downstream 488267 17831943 ~ 17845668 (+) True AMCG00009004
TU66371 other upstream 663178 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 752791 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 974209 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 1473066 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 2527434 14807297 ~ 14809286 (+) False AMCG00008919
TU66686 other downstream 385690 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 573990 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1207096 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3824555 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3930935 21274611 ~ 21275354 (+) True G53915

Expression Profile