RNA id: AMCG00009001


Basic Information

Item Value
RNA id AMCG00009001
length 2037
RNA type mRNA
GC content 0.55
exon number 22
gene id AMCG00009001
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17724719 ~ 17747043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTAAGAAGGGCAAGAAGGCAACAGCCTCTGCTGAGAAGAAAGAGGAAGCAGCCCCTCCACCAGAAGAGAAGAAACAGGAAGCAGCCCcagcagagaCTCCTGCTGACCAGGGAAAAACCGAGCTGACTGGTCTGTTTGTGGAGAAGCCTCAGACCGCCACTGCCACCACAGGTAAGGACATTGTGTTCGTGGCGAAGGTGGACTCCTCCAAGCTGATGAGAAAGCCAGTGATGAAGTGGCTGAAGGGCAAtggggaTGCAGGGGAAGATGCAGGTGATCTAGACTTCAGTGCTTTACTCAAGAAAAGGGAGGTGAAGAAGCAGGAGGAGCCGGTGGAGGAGACGGATGTGTGGGAGATCCTGAAGAATGCCAAACCCAGTGAGTTCGAGAAGATCGCCTTCCAGTACGGCATCACCGACCTGCGCGGCATGCTGAAGCGgctgaagaagatgaagaaggtGGAGCCCAAGAAGTGTGATGGGTCGGACAACTCCACAGTCAGCTTGATCCTGTTGCCCTTGTCCACTGAGTATGCACTGTCCAGCTTCTTCAGGAAGGCTGAGAGGGCCATGTTCAAGTGTGAGGTGTCTGATGACAAGGTCACTGGCAAGTGGTACAAAGATGGAGTGGAGGTGTTGCCTAGCAAACGCATCAAGATGAGCCACATCGGCAGaaTTCACAAGCTCACAATTGATGATGTTGTCCCTGAGGATGCTGGGGACTACACTTTCATCCCTGATGGAtatgccctctctctctctgccaagCTCAACTTCCtggAGATCAAGATTGACTATGTGCCACGACAAGatcCTCCCAAGATTCACCTGGACACCACTGGTAACATTGTATCTCAGAACACCATCATCGTCGTGATCGCCGAGGTGGAAGGCAGGGTGCGGGTTGAGAGCCGGAAGGACCTCAGCTGCTTTGTGATAGAGGGGGCAGAGCGGGAAGACGAGGGGAAGTACACCATCACTGTGACCAACCCTGCCGGTGAGGACAAGGCTGTGCTCTTCATCAAGATCGTGGacgtTCCTGACCCCCCTGAGGCAGTAAAGTGCATTGCAGTGGGGGAGGACTGCGCCACTATCGTGTGGGAGCCCCCGAAATATGACGGGGGACAGCCTGTGAAAGGCTACCTgatggaaagaaagaagaaaggcaGCTCGCGGTGGACAAAGCTGAACTTTGACATTTTTGAGGGGCAGACCTATGAGGCCAAGAGGATGATCGAGGGTGTGCTGTACGAGATGAGGGTGTTCGCGGTCAATGGCATCGGGGTTGGCCAACCAAGTGCAAACTCAAAGCCATTCATGCCCATCGCCCCCACCAGCGAGCCCACTCACCTGACTGTGGAGGATGTGACTGACACCACCACTACGCTGAAGTGGCGCCCGCCCGATCGACTTGGGGCAGGGGGCATCGACGGATATGCCATTGAGTACTGCAAGGAGGGAGacACCAAGTGGGTGTTGGCCAATCAGGAGCTGGTCGATAGGAACAGCTATATGGTGAAGGGTCTGCCCACTGGGGAGAAGATTGACTTCCGGGTCGTGTGCGTCAACATGGCCGGTCGCTCGCTACCAGCCAAGCTGAGCCAGCCTGTCACCATCCGCGAGATTGTCCagtATCCTAAGATCCGTCTGCCTCGACAGCTGAGGACAAAATACATCAAGAAAgggaaGCCCCGCCCCATCGTCACCTGGCTGAAGGACGGGCAGCCACTGGACCCCAAGAAGGAGTGGTTCACAGTGTACGAGCACAACCGCCGCACTAATTGCACAGTGTCTGATCTCATCATGGGCAATGAGTACTACTTCCGGCCCAAGATCATCTGGATGAAGAATAAGATGCAGATTGGCGAGGACCCCAAGTTCCGCATGCAGAACAACCAGGGCGTGTTGACCCTGAACATTCGCAAGCCCAGCCCTTATGATGGGGGCAGCTACAGCTGCATGGCTGTCAACTCACTGGGGGAGGCTGTGGTGGAGTGCAAGCTGGAGGTCAGAGTTCAACCTACTGAGAAGCTGTAA

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66673 lncRNA downstream 69511 17654125 ~ 17655208 (-) True G53286
TU66564 lncRNA downstream 380937 17343442 ~ 17343782 (-) True G53188
TU66529 lncRNA downstream 615008 17109061 ~ 17109711 (-) True G53156
TU66518 lncRNA downstream 642654 17081678 ~ 17082065 (-) True G53147
TU66513 lncRNA downstream 663168 17060808 ~ 17061551 (-) True G53142
TU66819 lncRNA upstream 342465 18084247 ~ 18084482 (-) True G53411
TU66834 lncRNA upstream 360940 18102722 ~ 18113638 (-) True G53425
TU66837 lncRNA upstream 389698 18131480 ~ 18131785 (-) True G53428
TU66903 lncRNA upstream 565655 18307437 ~ 18307999 (-) True G53478
TU66975 lncRNA upstream 859931 18601713 ~ 18601951 (-) True G53543
AMCG00008999 mRNA downstream 59983 17655595 ~ 17664736 (-) True AMCG00008999
AMCG00009000 mRNA downstream 97936 17615728 ~ 17626783 (-) True AMCG00009000
AMCG00008998 mRNA downstream 113361 17601832 ~ 17611358 (-) True AMCG00008998
AMCG00008994 mRNA downstream 504278 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008992 mRNA downstream 735293 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00009015 mRNA upstream 409081 18150863 ~ 18151365 (-) True AMCG00009015
AMCG00009012 mRNA upstream 434113 18175895 ~ 18208537 (-) True AMCG00009012
AMCG00009013 mRNA upstream 482065 18223847 ~ 18253002 (-) True AMCG00009013
AMCG00009011 mRNA upstream 530836 18272618 ~ 18288172 (-) True AMCG00009011
AMCG00009018 mRNA upstream 635652 18377434 ~ 18382391 (-) True AMCG00009018
TU66472 other downstream 811420 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 1110258 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 1319593 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 1650784 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 1761102 15957667 ~ 15963617 (-) True G52834
TU66751 other upstream 126604 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 2458965 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 2511122 20252904 ~ 20264085 (-) False G53809
TU67499 other upstream 4441306 22183088 ~ 22183565 (-) True G54003
TU68185 other upstream 7411484 25153266 ~ 25156338 (-) True G54544

Expression Profile