RNA id: AMCG00009005



Basic Information


Item Value
RNA id AMCG00009005
length 543
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00009005
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17819600 ~ 17829383 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGGGCCGGGCTAAAGAGTTTTGGGCAACAAACTGTGGCCCAACCCCCGGTGACTCAAGCGATGGGGCAATGCGAGGGAAGCAAAAAGGAGGCAGCAGCGGCACCTACTGAGGTCCTGAGCGGGGGGCGCTACTACTGGGAGGTGCAGTGGACTGGCTGGGTGGTGGTGGGTGTAGCCTTCCTCTCCCTCAGTCGCAAGGGGGAGAATGGGACATGTGGCCTGGGGGAGAACACAAAGTCCTGGGGCTTGGGCTGGGCTGGCTCCAGCTACCACGCTTGGCACAATGGGGAGCTGACTGACGTCACTGGGGTGCCCCGGGCGTCACAGCTTGGGGTATATCTGGACCAGCCAGCTGGCCTACTGGCTTTCTACTGCCTGAAGGgaggggtggaggagggggaggcagGGGAGGAGGCAGAGGTAGGGGTGGAGAGGGAGGCTGTGCTTCTGCACAAGTTCAAGGCCTCGTTCACAGAGCCACTGTTGCCTGGTTTCTGGGTGGGCAGTAACTCCTCCTGCACGCTGCTGAggagcgagtga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66689 lncRNA upstream 72664 17740544 ~ 17746936 (+) True G53300
TU66688 lncRNA upstream 82676 17736590 ~ 17736924 (+) True G53299
TU66676 lncRNA upstream 84784 17732614 ~ 17734816 (+) True G53288
TU66678 lncRNA upstream 133840 17674614 ~ 17685760 (+) True G53290
TU66641 lncRNA upstream 181226 17638161 ~ 17638374 (+) True G53255
TU66748 lncRNA downstream 39613 17868996 ~ 17870467 (+) True G53352
TU66750 lncRNA downstream 41124 17870507 ~ 17871066 (+) True G53354
TU66749 lncRNA downstream 42046 17871429 ~ 17872667 (+) True G53353
TU66754 lncRNA downstream 43419 17872802 ~ 17874655 (+) True G53358
TU66762 lncRNA downstream 55098 17884481 ~ 17884687 (+) True G53366
AMCG00009003 mRNA upstream 23303 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00008997 mRNA upstream 218582 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00008996 mRNA upstream 366383 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008995 mRNA upstream 475924 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008993 mRNA upstream 658059 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00009004 mRNA downstream 2560 17831943 ~ 17845668 (+) True AMCG00009004
AMCG00009002 mRNA downstream 34426 17863809 ~ 17868958 (+) True AMCG00009002
AMCG00009007 mRNA downstream 69695 17899078 ~ 17915696 (+) True AMCG00009007
AMCG00009009 mRNA downstream 88165 17917548 ~ 17920592 (+) True AMCG00009009
AMCG00009010 mRNA downstream 146651 17976034 ~ 18004741 (+) True AMCG00009010
TU66686 other upstream 88940 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 479926 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1146058 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1235671 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 1457089 16362102 ~ 16362511 (+) True G52942
TU66780 other downstream 88283 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 721389 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3338848 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3445228 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 3462858 21292241 ~ 21293901 (+) True G53917

Expression Profile