RNA id: AMCG00009007


Basic Information

Item Value
RNA id AMCG00009007
length 1711
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00009007
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17899078 ~ 17915696 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGATGGAAAAAAGCCCGTTGCCAGGCaatggggaggaggaggagggtgcaCTGGGGGTGGGGCAGTTGGCGGTGCAGCTCCTAGGTGACAGATCCAATGGGGTGGAGATGGAGGCAGGAGACTTGGTGCACTCTCgggcgTTCCTGTTGCTATATGTGCTGTTGCTGGCCCTGGTGGGTGTGCCACTGTTCTTCCTGGAGCTGGCGGCTGGTCAGAGCATCAGGCAGGGCAGCATCGGGGTGTGGGCCCATGTCTCCCCACGGTTGGCTGGCATCGGATACGCCAGCTGCATGGTGAGGTACTGCAAAGCATGGCCGCTGTGgtcatgtgtgtctgtgggctcagccatcttgattTACCCCCTTCCCTGGGAGGAGTGTCCAACCCTGACTGCCAACACCACTGGTACTGACCAGGTGAGGGAGTGTGCCCTTAGCTCCCCCACTTCCTATTTCTGGTACCGGCGGGCGCTGGATATCTCCCCGTCCATCACACAGTCCGGCTCCTTCAACCCCATGATGACCGGTTGCCTGCTGGCCGCCTGGACCATCGTCTGTCTGGCCATGATCAAGGGTATCAAGAGCTCGGGCAAGgtgatGTACTTTTCATCTTTGTTCCCCTATGTGGTTCTCTTGTGTTTCCTGATTCGGGGGCTGATGCTGGAGGGAGCATTCGAGGGGATCGCATACATGTTCTATCCTCGGGTGTTCTTCGCACTGGGCCTGGGCTTCGGCTCAATCATTGCCTACTCCTCCtacaacccccccaccaacaACTGTCACCGCGATGCCGTGGTCGTGGCCACCATCAACCTGATGACCTCCCTGCTGGCCACTCTGGTGGTCTTTGCTGTGCTGGGCTTCCGGGCGCACTCCATCACTTCCCACTGTGTTTCTCAGAACGTGGAGGTCCTGCTGCAGCTCTCCCACTCCTCCCAGCTCCCCACCCAGTGGCTGCCCCAGTTCAACCTGTCTGATCCagagtctgtgtctgtggggcAGTACAGCGCCTGGTTCAACCAGCTGGGGGCAGCACTGAACGGCACCGTCACCCCCTGTAACACGGAGGATGAGATGCAGAAGAACAGTGGGAACTACTACGTCTCGATGTTCGATGACTACTCTGCCACCCTGCCCCTCATCATTGTGGTCATCTTTGAGGCGGTTAGCGTGTCCTGGCTgttcATGGATGATATTGAGCGCATGATGAAATGGCGCCCCCCCCTGGTGTACAAGTACCTGTGGAAGTTTGTGTGTCCTTTGGCCATGGTGGGCCTTCTGTTGGCCAGCCTCCTCAGGATGTGCTTCAAACACCCCACTTACAAAGCCTGGGACAGGGAGCAGGTCAGTTGCTGCCAAACTGTGGAGAAACATGGGAGTTTGCTCATTTTTGTAAAACAGCTGCTGATTGAGAGGTGGGATAGAGGTCAGGAGGTCAGCAATGGAGGGGTCGGGGATGGTGACCCCATGACCTTCCGGCAACCCCATGACCCCGAGGCCTACAGGAAGTGCAGCACCGAACCCAGCGACCTCTCTGGCCCTGACCCCAGCTTGTTGCcattggaggaggaggaggaagaggaggagggtgCGGGAGGGAGGAGCATGGTTTCTGATAATGGCTTCCTGCCATTTGTGGGgagtggggaggggaggggggaggagcAGTACAGGCTCCTCCcacaggaagaggaggaggaggaaaattCA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66762 lncRNA upstream 14391 17884481 ~ 17884687 (+) True G53366
TU66754 lncRNA upstream 24423 17872802 ~ 17874655 (+) True G53358
TU66749 lncRNA upstream 26411 17871429 ~ 17872667 (+) True G53353
TU66750 lncRNA upstream 28012 17870507 ~ 17871066 (+) True G53354
TU66748 lncRNA upstream 28611 17868996 ~ 17870467 (+) True G53352
TU66814 lncRNA downstream 161975 18077671 ~ 18077878 (+) True G53406
TU66817 lncRNA downstream 168108 18083804 ~ 18084038 (+) True G53409
TU66818 lncRNA downstream 168622 18084318 ~ 18084530 (+) True G53410
TU66822 lncRNA downstream 180534 18096230 ~ 18098551 (+) True G53414
TU66823 lncRNA downstream 183320 18099016 ~ 18099647 (+) True G53415
AMCG00009002 mRNA upstream 30120 17863809 ~ 17868958 (+) True AMCG00009002
AMCG00009004 mRNA upstream 53410 17831943 ~ 17845668 (+) True AMCG00009004
AMCG00009005 mRNA upstream 69695 17819600 ~ 17829383 (+) True AMCG00009005
AMCG00009003 mRNA upstream 102781 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00008997 mRNA upstream 298060 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009009 mRNA downstream 1852 17917548 ~ 17920592 (+) True AMCG00009009
AMCG00009010 mRNA downstream 60338 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009008 mRNA downstream 98010 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009006 mRNA downstream 121098 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009014 mRNA downstream 303376 18219072 ~ 18220253 (+) True AMCG00009014
TU66686 other upstream 168418 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 559404 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1225536 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1315149 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 1536567 16362102 ~ 16362511 (+) True G52942
TU66780 other downstream 1970 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 635076 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3252535 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3358915 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 3376545 21292241 ~ 21293901 (+) True G53917

Expression Profile