RNA id: TU66780



Basic Information


Item Value
RNA id TU66780
length 1155
RNA type TUCP
GC content 0.56
exon number 4
gene id AMCG00009009
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 17917548 ~ 17920592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtCCTCCGCGACAGGGTCACTGAGATAGATAgggagaaagaaacagaaaaataaatagagaaataaccagggaatatatatatatatatattattgctgTTTCAAATAACTGCGACACCAGCTACACACAGCTCGAGCTGTGCACCGGGAGGTATCCGTAGGCCGACGTGGTGCAGCATTGGATAGACAATAAACACAGGGGGAGAGACGAAACACGGAGGCAGGGAGACCTGTCTGCACCGTCACCTTGCCGTATATAGAGGATGTCAGGGATGTGTGCAGGAGGGTCGGGGGGGTCAAGGACGTCAGTCACTCGCTGGGTGATTTCAGATGATGGGAGTCAGTTGATTCGTCGAGAGGAACTGGAGGGGGAGTTAGGTGTGGATTCAGAGACTCAGGCTGTCATTGTGAAAGAAGAGATGATGGAACAGCCAGTCACCCCCTCCAGGAACAtgcagAGGGAGGTGCCAGTCTCGTACCCATGTCCATACTGTGAGATCTGCTTCACAGCGCTGCACTACCTGGAGAAACACATCAAGCGCTCGCACAGGAAGCAGTACCTGGATATGCTGCGTAGCCGAGCAGTTACCTTTCAGAAACCTGTGGCCTCCTCCTCGTCTTCCCCGTCCCCCTCACtacccctctcctcctcctcttccttcccaTTGGCAACACCACCTGCCACTCACCCTTCCACTGGCCAATCGCGACTGCCCCCAAAACTCAAGCCTTCCTGCCACCTCCCCTTCTCAGGCTCTGCCCCTCCCACTTCCACTCCTCTACTGTCCTCACCTGCTTCCTGGGCCCCGCCCTCCCACCTCAGAGCCAAGCCCTCCCCCCGCAGCAGTAGTCGACCAATGGCAGCTAGTTCCCATCCCTCggtccctccccctccctctttaGCCACTGCTCAGAGTCACAGTACCAGCTtgaagggggagggagagaaggatggagaaggggaggggggaggaggaggagatgtgATGCTTAAACTGCCAcgcccccctccctctctcctctctgacCCCCTTAAAACAACAGatccctccttttctctctccctctcttccctctctccctcctgtgcTCACTGTGGGGGACTGCGCCTGGTGAATggacaggaggaagagagaggaggggaggaagAAGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66762 lncRNA upstream 32979 17884481 ~ 17884687 (+) True G53366
TU66754 lncRNA upstream 43011 17872802 ~ 17874655 (+) True G53358
TU66749 lncRNA upstream 44999 17871429 ~ 17872667 (+) True G53353
TU66750 lncRNA upstream 46600 17870507 ~ 17871066 (+) True G53354
TU66748 lncRNA upstream 47199 17868996 ~ 17870467 (+) True G53352
TU66814 lncRNA downstream 157618 18077671 ~ 18077878 (+) True G53406
TU66817 lncRNA downstream 163751 18083804 ~ 18084038 (+) True G53409
TU66818 lncRNA downstream 164265 18084318 ~ 18084530 (+) True G53410
TU66822 lncRNA downstream 176177 18096230 ~ 18098551 (+) True G53414
TU66823 lncRNA downstream 178963 18099016 ~ 18099647 (+) True G53415
AMCG00009007 mRNA upstream 1970 17899078 ~ 17915696 (+) True AMCG00009007
AMCG00009002 mRNA upstream 48708 17863809 ~ 17868958 (+) True AMCG00009002
AMCG00009004 mRNA upstream 71998 17831943 ~ 17845668 (+) True AMCG00009004
AMCG00009005 mRNA upstream 88283 17819600 ~ 17829383 (+) True AMCG00009005
AMCG00009003 mRNA upstream 121369 17788520 ~ 17796297 (+) True AMCG00009003
AMCG00009010 mRNA downstream 55981 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009008 mRNA downstream 93653 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009006 mRNA downstream 116741 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009014 mRNA downstream 299019 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009016 mRNA downstream 441473 18361526 ~ 18374268 (+) True AMCG00009016
TU66686 other upstream 187006 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 577992 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 1244124 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 1333737 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 1555155 16362102 ~ 16362511 (+) True G52942
TU66948 other downstream 630719 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 3248178 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 3354558 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 3372188 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 5963264 23883317 ~ 23975906 (+) True G54263

Expression Profile