RNA id: AMCG00009019


Basic Information

Item Value
RNA id AMCG00009019
length 712
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00009019
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18396177 ~ 18402246 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTAGAGACCGAGACCATGGGGGGCCGGAAGGAATGGAGCCTGATGGTGTCATTGAGAGCAACTGGAACGAGATTGTTGACAACTTTGATGACATGAACTTGAAGGAGACTCTCCTTCGTGGTATCTATGCTTATGGTTTTGAGAAGCCATCAGCCATTCAGCAAAGAGCCATCATTCCATGTATTAAAGGCTATGATGTCATTGCTCAGGCCCAGTCAGGAACTGGCAAGACAGCCACATTTGCCATCTCTatcctgcagcagctggagaTCGATCAGAAGGAGACCCAGGCTCTGGTGCTAGCTCCCACCAGAGAGCTGGCACAACAGATACAGAAAGTCATTCTAGCTCTCGGAGACTACATGGGAGCCACATGTCATGCTTGCATTGGGGGTACCAATGTCCGCAATGAGATGCAGAAGCTGCAGGCTGAGGCTCCCCACATTGTGGTGGGGACACCAGGCCGATGGATCAAGATGTTTGTTTTGGATGAGGCTGATGAAATGTTGAGTCGGGGGTTCAAGGATCAAATCTATGAAATTTTCCAAAAATTAAGCACAAACATCCAAGTAGTGCTTTTGTCTGCTACAATGCCAGCTGATGTGTTGGAGGTGACCAAAAAATTCATGCGAGACCCAATCCGCATATTGGTGAAGAAGGAGGAGCTTACCTTAGAAGGTATCAAGCAGTTCTACATAAACGTGGAAAGG

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66903 lncRNA downstream 88178 18307437 ~ 18307999 (-) True G53478
TU66837 lncRNA downstream 264392 18131480 ~ 18131785 (-) True G53428
TU66834 lncRNA downstream 282539 18102722 ~ 18113638 (-) True G53425
TU66819 lncRNA downstream 311695 18084247 ~ 18084482 (-) True G53411
TU66673 lncRNA downstream 740969 17654125 ~ 17655208 (-) True G53286
TU66975 lncRNA upstream 199467 18601713 ~ 18601951 (-) True G53543
TU66988 lncRNA upstream 257105 18659351 ~ 18659633 (-) True G53556
TU67000 lncRNA upstream 319864 18722110 ~ 18722374 (-) True G53568
TU67009 lncRNA upstream 432890 18835136 ~ 18835373 (-) True G53577
TU67050 lncRNA upstream 724496 19126742 ~ 19127019 (-) True G53613
AMCG00009018 mRNA downstream 13786 18377434 ~ 18382391 (-) True AMCG00009018
AMCG00009011 mRNA downstream 108005 18272618 ~ 18288172 (-) True AMCG00009011
AMCG00009013 mRNA downstream 143175 18223847 ~ 18253002 (-) True AMCG00009013
AMCG00009012 mRNA downstream 187640 18175895 ~ 18208537 (-) True AMCG00009012
AMCG00009015 mRNA downstream 244812 18150863 ~ 18151365 (-) True AMCG00009015
AMCG00009017 mRNA upstream 2268 18404514 ~ 18410122 (-) True AMCG00009017
AMCG00009020 mRNA upstream 70388 18472634 ~ 18473701 (-) True AMCG00009020
AMCG00009021 mRNA upstream 858041 19260287 ~ 19261111 (-) True AMCG00009021
AMCG00009023 mRNA upstream 1320695 19722941 ~ 19728530 (-) True AMCG00009023
AMCG00009024 mRNA upstream 1337042 19739288 ~ 19739999 (-) True AMCG00009024
TU66751 other downstream 527481 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 649134 17736589 ~ 17747043 (-) False AMCG00009001
TU66472 other downstream 1482878 16853029 ~ 16913299 (-) False AMCG00008989
TU66358 other downstream 1781716 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 1991051 16404710 ~ 16405126 (-) True G52951
TU67292 other upstream 1798501 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 1850658 20252904 ~ 20264085 (-) False G53809
TU67499 other upstream 3780842 22183088 ~ 22183565 (-) True G54003
TU68185 other upstream 6751020 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 6771431 25173677 ~ 25176378 (-) True AMCG00009100

Expression Profile