RNA id: AMCG00009022


Basic Information

Item Value
RNA id AMCG00009022
length 416
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00009022
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19527897 ~ 19547507 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTTCAGTGGTGGATACTACAGAGGTGGATTTGAGCCAAAAATGACCAAGAGAGAGGCTGCACTAATTTTAGGAGTCAGtccCACTGCTAACAAACTGAAGATCAGGGAAGCACACAGAAAAATCATGGTACTGAATCACCCGGATAGAGGTGGATCCCCATATCTTGCAGCAAAAATTAATGAAGCCAAGGACTTACTTGATGGGCAAGCCAAGAAGTAGAGGAAGCCTATGGAATAACTTGGGATGGATGTGAAAGatcaagaacaaaacacaaagaagttGAAATTATTATCTGAGAtgtaactataataaaaaaaaaatgaagacatttgCATTCTGTTTGACCACCtgcttgttttgatttattatggtctgtggaaaagaaaaaacacctgtTTTGCACATAACCAAGG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67090 lncRNA upstream 55080 19489083 ~ 19489284 (+) True G53645
TU67076 lncRNA upstream 192565 19351535 ~ 19351799 (+) True G53631
TU67075 lncRNA upstream 192903 19351253 ~ 19351461 (+) True G53630
TU67072 lncRNA upstream 224080 19319781 ~ 19320284 (+) True G53627
TU67019 lncRNA upstream 501619 18993885 ~ 19042745 (+) True G53585
TU67113 lncRNA downstream 29813 19577320 ~ 19577907 (+) True G53663
TU67126 lncRNA downstream 134467 19681974 ~ 19682227 (+) True G53675
TU67156 lncRNA downstream 273072 19820579 ~ 19820929 (+) True G53695
TU67167 lncRNA downstream 412066 19959573 ~ 19960355 (+) True G53706
TU67179 lncRNA downstream 436362 19983869 ~ 19985883 (+) True G53711
AMCG00009016 mRNA upstream 1170096 18361526 ~ 18374268 (+) True AMCG00009016
AMCG00009014 mRNA upstream 1324111 18219072 ~ 18220253 (+) True AMCG00009014
AMCG00009006 mRNA upstream 1503403 18036794 ~ 18040961 (+) True AMCG00009006
AMCG00009008 mRNA upstream 1522045 18013706 ~ 18022319 (+) True AMCG00009008
AMCG00009010 mRNA upstream 1539623 17976034 ~ 18004741 (+) True AMCG00009010
AMCG00009026 mRNA downstream 313771 19861278 ~ 19915906 (+) True AMCG00009026
AMCG00009025 mRNA downstream 391569 19939076 ~ 19949435 (+) True AMCG00009025
AMCG00009032 mRNA downstream 715568 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009033 mRNA downstream 829288 20376795 ~ 20394819 (+) False AMCG00009033
AMCG00009034 mRNA downstream 908950 20456457 ~ 20461014 (+) True AMCG00009034
TU66948 other upstream 990404 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 1624311 17917666 ~ 17920053 (+) False AMCG00009009
TU66686 other upstream 1813704 17729366 ~ 17730660 (+) True G53298
TU66558 other upstream 2204690 17330892 ~ 17339674 (+) True AMCG00008995
TU66371 other upstream 2870822 16672503 ~ 16673542 (+) True G53028
TU67402 other downstream 1620724 21168231 ~ 21168575 (+) True G53911
TU67406 other downstream 1727104 21274611 ~ 21275354 (+) True G53915
TU67408 other downstream 1744734 21292241 ~ 21293901 (+) True G53917
TU67814 other downstream 4335810 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 5265111 24812618 ~ 24816534 (+) True AMCG00009085

Expression Profile