RNA id: AMCG00009043


Basic Information

Item Value
RNA id AMCG00009043
length 2439
RNA type mRNA
GC content 0.43
exon number 15
gene id AMCG00009043
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22613352 ~ 22631352 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAGGCGCCTATACTCCTTGCTAACGGCATCAAGTAGCCAAAACCTTCCgaatttcttttaaaaagtgaacTTGCTCAGGATTAGATAACACAGCGAATGCACagcaatcaattaaaaaaaaaagtgcattgtgtTTCAGAGATTTAAAAGGGATTTCATTTTCTAACGAGGAGGCAGTAGCCAGCAGTGGTGTACCTCTACGTTTTCCCCAAAGGCTTGTTCGGCACTGTTGCTTAGATGCCATATTCCAGTGCGTAGCTGAAACCGAAGCAAGAGTCCAATGCTTCTTAAAGACCTTTGTCAAGGACTTAGCTGTTTTGGTTTACTAAGCAGTGAGTGAAGTAGTTCAGCTGccagaaaatggaaaataataccACACAGATTTCTCGGGAGGACCTGGAGGAACTGAGGGAAGCTTTTGATAAGATAGACATTGATAACAGTGGCTATGTCAGCGACTTTGAGTTGCAGGAACTCTTTAGAGAGGCCAGATTTTCCTTACCGGGCTTCAAGGTGCGAGAAATCGTAGAGAAGATGCTGGGGGCGGCCGACCACAACAAAGACGAAAAGATATCTTTTGAAGAGTTTGTATCGCTTTATCAGGAGTTGAAAAGTAAGGAGGTCAGAGAGTCGTTCCGCAAAGCCATTAACAAGAAAGATGGAATTAGGTCCTTTGGAGGGACCTCTGGCATATCCAGTGAAGGAACACAGCATTCGTATTCCGATGAAGAAAAAGTTGCATTTGTGAACTGGATTAACAAGACTTTGGCCGAAGATCCAGATTGCAAACATCTATTGCCTATGGACCCGGAAAATGAGAGCCTTTTCAAATCTGTGAAGGACGGCATACTCCTGTGCAAAATGATAAACTTTTCCCAGCCAGATACGATTGACGATAGGgttataaatacaaagaaactgACAACATTTACCATTTCTGAAAATCTGGTCCTAGCTTTGAATTCGGCCTCAGCCATTGGCTGCACCGTGGTCAATATTGATGCCCAGGACCTGATTATGGGAAAGCCACACTTGGTACTGGGCCTACTGTGGCAGATCATCAAGATCGGCCTGTTTGCTGATATTCAGATCTCCAGAAATGAAGCACTCATTGCTCTGCTGGGGGAAGGAGAGGACCTGGAACAACTACTGTCCATGTCCCCAGAGGAGCTTCTGCTGCGCTGGGTCAACTACCACCTCAATAATGCTGGCTGGCAGCCAATCGGAAACTTCACTGAGGATATCAAGGAGAAGGATGATATTCAAAGGGCAGAGTTCATGCTCCAGCAAGCTGCCAGACTGGACTGCAGACAGTTTGTCACCCCTGCAGATGTTGTAGCCGGGATTCATAAACTCAACATCGCTTTTGTGGCCAACCTATTTAATACCTACCCAGCCCTGAACAAACCAAACCACAACGATATTGATTTGTCTTTGCTGGAAGGAGAAACAAGAGAAGAAAGAACATTCCGGAACTGGATGAATTCCTTGGGGGCGTACCCATATGTCAACCACTTATATCGTGACCTGACTGATGCCCTGGTGATCCTTCAGCTGTATGAAAAAATCCAGGTTCCAGTGGAGCAGAAGCGAcTTGAAAACTGTAACTATGCAGTTGAACTTGGAAAGAAGGAAGCTAAATTCTCCTTGGTTGGGATCGGGGGAGTAAACATTAATGAAggcaataaaacacatacattggCCTTGGTGTGGCAGCTAATGAGaagGTACACTGTGAAGGTTCTCTCTGATCTTGGGGAGGGTGAAAAAGTTAACGatgaattaattgttaattgggTGAACACAGCTTTAAAAGAAGGCAAAAAGGAAACTGCCATCACAAGCTTTAAGGACAAGCTTATCAGCACCAGCTTACCGGTGATAGATTTAATAGACACTATTGCCCCCAATGCCATTAAAGAAGAAATGGTGAAGAGGGAGAACCTCTCGGATGAGGACAAGCTGAACAATGCAAAgTATGCAATTTCCGTTTCCCGTAAAATCGGGGCTCAAGTGTATGCTCTGCCTGACGACTTAGTCGAAGTGAAACCAAAAATGGTGATGACAGTGTTTGCGTGTCTGATGGGAAGAGGCCTGAAGAATGTTAAAGCATgaatgaaatgtgctgttttattACTGCCACACAGAGCATATACTAGAATATTGTTTAcagttttgttgattttaccATACATAATAATCCTAGCATCTTATCTTTGCTAGCCATGTTCAAGggagtgtattttattttctgattgttttaaaacttaaatctTGTTTAGCTTATGATTTCAAAGCTCCtgttatttaatcaaattttgAATACTAAGAGACCTTACTCTCCTGCCTTGATTTTTCCACATCTGAGATTCATAACCAAAGTGTTTGTATATCCatgttacattttcagtagCTCATTAAAGATTAATTGTCAGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67534 lncRNA upstream 9875 22534593 ~ 22603477 (+) True G54032
TU67532 lncRNA upstream 70590 22521056 ~ 22542762 (+) True G54031
TU67530 lncRNA upstream 85269 22519866 ~ 22528083 (+) True G54030
TU67496 lncRNA upstream 464926 22147871 ~ 22148426 (+) True G54000
TU67490 lncRNA upstream 507949 22105190 ~ 22105403 (+) True G53995
TU67571 lncRNA downstream 58586 22689938 ~ 22691180 (+) True G54063
TU67632 lncRNA downstream 75789 22707141 ~ 22707844 (+) True G54101
TU67644 lncRNA downstream 147023 22778375 ~ 22857522 (+) True G54112
TU67649 lncRNA downstream 174887 22806239 ~ 22810596 (+) True G54116
TU67676 lncRNA downstream 345109 22976461 ~ 22976682 (+) True G54138
AMCG00009042 mRNA upstream 171885 22430340 ~ 22441467 (+) True AMCG00009042
AMCG00009038 mRNA upstream 1526327 20997898 ~ 21087025 (+) True AMCG00009038
AMCG00009035 mRNA upstream 1920965 20686145 ~ 20692387 (+) True AMCG00009035
AMCG00009034 mRNA upstream 2152338 20456457 ~ 20461014 (+) True AMCG00009034
AMCG00009033 mRNA upstream 2218533 20376795 ~ 20394819 (+) False AMCG00009033
AMCG00009049 mRNA downstream 1365 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009050 mRNA downstream 38532 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009052 mRNA downstream 72834 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009053 mRNA downstream 219639 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009056 mRNA downstream 1026849 23658201 ~ 23662213 (+) True AMCG00009056
TU67408 other upstream 1319451 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 1337998 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 1444777 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 4059392 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 4693299 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 1251965 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 2181266 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 2283677 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 2953540 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 4982231 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile