RNA id: AMCG00009049


Basic Information

Item Value
RNA id AMCG00009049
length 2916
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00009049
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22632717 ~ 22648476 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAGGACCAATGCGTTGAGAGCGCCAGGCGGGGGTGAAGTTGTTTATAATAGCTCGCTGGTTATAAAGATACAGCTTGCGTCCCGTATAAAGGCATATGTCGTATATGTACACGAAAATAGAATAAATAGCAGGAGAAAGAACTTGGGAGTGACTATAAAAATCTCCCTGCATCATAAAACAGATCACACATCGCCGAGCAACCGCAAGGAAAGAAGATTGGACATAATTATCTTGGAATTGTATTGCTCAGCTGTTGATACTGAGGTGGGGGTGTTGCTCCTCtagaacgaaaaaaaaaaacgaaacggAAGGGCTTCTTCTTTAAATGGACGCTTCTGCTTAGTGTGTGATGCACATCAATGTGTTGCCGTACTCTTTTTCTGTCATAATGGCTGCTCTGTACCAGAGCACAGATTCGTCCTCTCCGGATAAGTATCTGGCACTGAAGGATGTGCGGGAGGTGAAAGAGGAAACGACCCTGGACGAGAAGCTATTCTTGCTGGCTTGTGAGAAAGgtGACTATTATATGGTGAAAAAACTTTTGGAAGAGAAGAGGCATGGTGACTTTAATATTAACTGTGTGGATGTTCTGGGCAGAAATGCTGTCAccatttcaattgaaaatgaGAACTTGGATATTCTGCAACTTCTTTTGGAGCATGGATGTCAGaCCACAGATGCACTTCTGGTTGCCATTGATTCAGAAGTAGTGGGGGCCGTTGATATCCTACTCAATCATCGACCAAGGAGGTCCTCCAAGCCATCAATTGCAAAACTGATGCAGCGTATTCAGAACCCGGAGTACTCTACAACTATGGATGTGGCCCCTGTCATTCTTGCGGCTCATCGGAACAACTATGAGATCCTGACCATGCTGCTGAAGCAGGACATCTCCCTGCCCAGGCCTCATGCGGTTGGCTGCGAGTGCACCCTCTGCAATGCCAAGAACAAAAAGGACAATATATACCGCTGCTTGGCAAGCCCCTCGCTGATAATGCTCACTGAAGAAGACCCAATACTCAGAGCCTTTGAGCTCAGTACAGACCTGAAGGAGCTTAGCCTGGTGGAAGTGGAGTTCAGAAATGACTATGAGGAGCTGGCCAAACAGTGCAAGATGTTTGCCAAGGACCTGCTGGCTCAGGCCAGGAACTCCCGGGAGCTGGAGGTGATTCTGAACCACACGTACAGCGACGAGCATGTGGACAAGCGGGGCCTGCTGGAGGAGCGCATGAACCTCAGCCGCCTCAAACTGGCCATCAAGTACAACCAGAAGGAGTTTGTGGCCCAGTCAAACTGCCAGCAGTTCCTAAACACAGTGTGGTTTGGGCAGACAGCCAGCTATAGGCGTAAGCACACTTGTCTGAAGATCCTGACAGTATTGACAGTGGCTATGCTTTGGCCtatcctgtctgtctgttacCTGCTGGTGCCAAGATCCCGAGTAGGCCAGGTTATCCACACTCCCTTTGTGAAGTTCATCATCCACATGGCTTCCTACTTCACCTTCCTGTTGCTGCTCAACCTCTACTCACTGGTCTACAATGAAGGCAAGAGAAACACCATGGGCCCAGCCCTAGAAATGATTGACTACTTGCTGATTCTTTGGATCATAGgAATGGTGTGGTCAGATGTGAAAAGACTGTGGTATGAAGGGCTGGAGGATTTTTTGGAGGAATCACGTAATCAGCTGAGTTTCGTCATGAACTCCCTCTATTTGTCAACCTTTGCCCTGAAAGTGGTAGCACACCACAAGtttaaaaacaaagatgacaCAGAGAGGAAGTATTGGGATGCTTTTCATCCCATCCTGGTCGCTGAGGGTCTTTTTGCCTTTGCCAATATTTCAATGGGACAGATGCTTCAGGAATTCGGCAAGTTCCTGGGTCTGTTTCTGCTTGTTCTCTTCTCCTTCACCATTGGGCTGACACAGCTGTACGGCAAGGATGAGAAGGAACGAAGCAAGACTGCGGAGAAAGACTGTGTGGGGATTTTCTGCGAGCAACAAAGCAATGATACATTCCATTCGTTCATAGGCACATGTTATGCCTTGTTCTGGTACATTTTTTCCATGGCCCATGTGGCTCTGTACGTGACAAGGATCAGCTATTCAGAGGAGTTGCGCTCATTTGTCGGAGCCTTGATCATTGGAACATATAACATTGTGGTTGTCATTGTTTTGACGAAACTGCTGGTAGCTATGCTGCACAAAAGTTTCCGCCAGATCGCAaACCACGAGGACAAAGAATGGAAGTTCGCCAGGGCCAAGCTGTGGCTGAGCTATTTTGATGACAAATGTACCTTGCCTCCCCCCTTCAATATCATACCTTCCCCAAAGACCATATGCTATCTCATCACCAGCCTCAGTAAATGGATCTGCTCTCACACCTCCAAAGGCAAGgtcaaaagacaaaacagcCTCAAAGAGTGGAAGACCCTGAAGCAGAAACGAGATGAGAATTACCAGAAGATAATGTGCTGTCTTGTTCATCGATACCTGACCTCTACCAGACAGAAGTTGCAGAGCACTGACCAGGCCACAGTGGAGAACCTCAATGATCTCAGACAGGACCTTTCCAAATTCCGAAACGAAATGAGGGATCTGCTTGGTTTCCGAACCTCCAAGTATGCCATGTTTTACCCCAGAAGCTAACTCTTTCCCCTGCAAGCCAAGAATGCTTGAAAATCTCCATCTTCTAGTTCAGGAAAATagaggacattttaaaattcccTGGAACTTACTGGAACACCTTTCATATAGAACCCCTTGAAAATCTGCCCTTGTATATTATACTCaactgttatttgttttttaataactgttattctttttaatgaaaagataaaataaatgatttcagaaaaaaaggtATGGATTGATCCTATTCTCCTACACACCAACACAACAAAAATCTC

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0001525 angiogenesis biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0001570 vasculogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04964 TRPC1; transient receptor potential cation channel subfamily C member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67534 lncRNA upstream 29240 22534593 ~ 22603477 (+) True G54032
TU67532 lncRNA upstream 89955 22521056 ~ 22542762 (+) True G54031
TU67530 lncRNA upstream 104634 22519866 ~ 22528083 (+) True G54030
TU67496 lncRNA upstream 484291 22147871 ~ 22148426 (+) True G54000
TU67490 lncRNA upstream 527314 22105190 ~ 22105403 (+) True G53995
TU67571 lncRNA downstream 41462 22689938 ~ 22691180 (+) True G54063
TU67632 lncRNA downstream 58665 22707141 ~ 22707844 (+) True G54101
TU67644 lncRNA downstream 129899 22778375 ~ 22857522 (+) True G54112
TU67649 lncRNA downstream 157763 22806239 ~ 22810596 (+) True G54116
TU67676 lncRNA downstream 327985 22976461 ~ 22976682 (+) True G54138
AMCG00009043 mRNA upstream 1365 22613352 ~ 22631352 (+) True AMCG00009043
AMCG00009042 mRNA upstream 191250 22430340 ~ 22441467 (+) True AMCG00009042
AMCG00009038 mRNA upstream 1545692 20997898 ~ 21087025 (+) True AMCG00009038
AMCG00009035 mRNA upstream 1940330 20686145 ~ 20692387 (+) True AMCG00009035
AMCG00009034 mRNA upstream 2171703 20456457 ~ 20461014 (+) True AMCG00009034
AMCG00009050 mRNA downstream 21408 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009052 mRNA downstream 55710 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009053 mRNA downstream 202515 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009056 mRNA downstream 1009725 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009058 mRNA downstream 1168349 23816825 ~ 23825087 (+) True AMCG00009058
TU67408 other upstream 1338816 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 1357363 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 1464142 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 4078757 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 4712664 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 1234841 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 2164142 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 2266553 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 2936416 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 4965107 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045262 True 2904 mRNA 0.48 13 NC_007135.7 5840748 ~ 5869622 (+)
grasscarp (Ctenopharyngodon idella) TU313411 True 1895 lncRNA 0.48 9 CI01000070 656663 ~ 676986 (+)