RNA id: AMCG00009051


Basic Information

Item Value
RNA id AMCG00009051
length 592
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00009051
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22721882 ~ 22817993 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACACACAGAGTAAAAATGCTTGAAGGAGACCACAAAAAGCACCAGCAAGAGTGCACAGAATTGCTTGCACTTAATTTAATATCGATGCTAACAATTTTAACGATGTGGTTATTGAGGCAACATAAAATCAGATTTCTGCACGAAACTGGCGGAGCTATGTTTTATGGGTTAATAATGGGACTAATTCTACGATATGCAACTGCTCCATCAAACCCAGAAAATGCCACACTGTTCCACTGCTGTAGCCTTAACAGCACTCCTGTCTCCCTGTTGGTTAATGTAACTACTCGGGTGCATCATTACAATTACATAGGAGAGGTCAGGAACCACGATATTCAAGGCTTCCATGTCAATCCAATACTCCAGAAGttagaagaagaggaagaagaagaagaagaagaagaagaagaggaagaacaagcttttctttttctgCTTTTTGAATTCATCAACTTCATtgttgaaagcttcattttctCCTATATGGGCCTGGCAATGGCTACCTTTCAGAACCACAACTTCAACTCAGTCTTCATTACAGGATGGGTGTTGATTCAGATGAAGATCCAAAAGGAGAGTCAAGTTCTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67599 lncRNA downstream 91374 22629331 ~ 22630508 (-) True G54078
TU67504 lncRNA downstream 417989 22303608 ~ 22303893 (-) True G54008
TU67495 lncRNA downstream 574318 22147308 ~ 22147564 (-) True G53999
TU67447 lncRNA downstream 913271 21808284 ~ 21808611 (-) True G53955
TU67445 lncRNA downstream 949891 21771646 ~ 21771991 (-) True G53953
TU67677 lncRNA upstream 158468 22976461 ~ 22976682 (-) True G54139
TU67700 lncRNA upstream 321462 23139455 ~ 23139692 (-) True G54161
TU67708 lncRNA upstream 351446 23169439 ~ 23169829 (-) True G54167
TU67711 lncRNA upstream 362334 23180327 ~ 23191495 (-) False G54168
TU67710 lncRNA upstream 363163 23181156 ~ 23191495 (-) True G54168
AMCG00009048 mRNA downstream 55697 22648694 ~ 22666185 (-) True AMCG00009048
AMCG00009045 mRNA downstream 114995 22559529 ~ 22606887 (-) True AMCG00009045
AMCG00009046 mRNA downstream 164894 22540747 ~ 22556988 (-) True AMCG00009046
AMCG00009047 mRNA downstream 192618 22511192 ~ 22529264 (-) True AMCG00009047
AMCG00009044 mRNA downstream 235081 22475354 ~ 22486801 (-) True AMCG00009044
AMCG00009054 mRNA upstream 560614 23378607 ~ 23402492 (-) True AMCG00009054
AMCG00009055 mRNA upstream 632552 23450545 ~ 23469100 (-) True AMCG00009055
AMCG00009057 mRNA upstream 827461 23645454 ~ 23656150 (-) True AMCG00009057
AMCG00009060 mRNA upstream 1007236 23825229 ~ 23863035 (-) True AMCG00009060
AMCG00009062 mRNA upstream 1076101 23894094 ~ 23914458 (-) True AMCG00009062
TU67499 other downstream 538317 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 2457797 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 2457797 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 4853186 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 4974839 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 2335273 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 2355684 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 3975548 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 4795605 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 6240291 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile