RNA id: AMCG00009058


Basic Information

Item Value
RNA id AMCG00009058
length 2976
RNA type mRNA
GC content 0.38
exon number 11
gene id AMCG00009058
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23816825 ~ 23825087 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAGCCATTCTGAGACCACAGCCAACATGAAGGTTCTTCTGTTCCTGCAGTTTGTTGCAGCCGCTTTGGCTGTACCCTCATCCACAAGATATGATGGGGATGTGGTTTATCGTCTGAAACCAGAAAACCAGGATCATGTTGAAATAATTAAAGAGCTGGCCAATAGCATTGAGGTTGACTTCTGGAGGCCAGAGAATATTGAGTTAGTCACTGCCAACTCACATGTGGACATCCACTTCAGTGCTGAACACTTTCTGCTTGTGAACAACCTTCTGCAACAAAGTGGAATGAAGCATGAAGTACTGATTGAGAATCTGCAGGAGGCAGTTGAGGGGCAGTTCAATGCTAAAGAGCGTTCAACTGAAATTTACAACTACGAAAAGTACAACAACTTGCAGCAGATTGAATCCTGGGTTGCCAATATGGCAGCTGCAAACCCCAGTCTGATAACAACATCCCAGATTGGAACAAGTTACGAGGGACGCAGAATGCACCTGCTCAAGCTGGGTAAACCTAGTAGCTCTCCTAAGCCTGCAATCTTCATGGACTGTGGAATTCATGCCAGAGAATGGATCTCTCCTGCTTTCTGTCAGTGGTTTGTTAAGGAGGCTTTAACAACATATGGAAGTGATTCTGCAATGACCAGTCTGCTGAATACCATGGATGTCTATGTCCTGCCAGTTCTTAATGTTGATGGCTATGACTACACTTGGACGAATAATAGGATGTGGAGGAAGACCCGGTCTAGGAAATCTGGCAGCTCATGCATTGGGGCTGATCCCAACAGGAACTTTGATGCAGGCTGGTGCAgaATTGGGGCTTCAACCAATCCCTGCAGTGACACTTACTGCGGTGCCAAACCAGAATCAGAGGTGGAGGTTAAGGCTGTTGCTGATTTCATTCGGAGAAATCTTTCCAGCATCAAGGCTTATATCACTGTCCATTCCTACTCCCAGCTGCTTCTCTTCCCCTACTCCTACACTACCGCACTGGCTCCAGACCATGAAGAACTGCTTCGGGTTGCCAAAGCAGCTGCAAATGCATTGACCAGCCTTTATGGAACTCAATACACTTCTGGGCCAGGAGCTGTGACTATCTACCCTGCTGCTGGTGGTTCAGACGACTGGGCATATGACCTGGGTGTCAAGTACTCTTATACCTTTGAACTGCGTGACACAGGACGTTACGGCTTCCTCCTCCCAGAATCTGAGATCAGGCCTACCTGTCAGGAAACAATGCTGGCTGTCAAATACATTGCCTCTTACGTTCAGAAAAATGCTTACTGAACAGGCTTAATGAAAttgcattacaataaataaagtaaaacgaCTCAATCAATCCTATCCTTAgattttactttctttctgtcattatgtatttaatctgtGAATTTACTACATGGTctgtcattatttaattatggaaATGCCTGAGACCAAAGTGGCTTGTAAAAAGAAGATTTGTCAATGGTTTTTAAATgggattgtgttttgttcactTTGATGCAACTGCTTCACCTACATTAAAGCAACATTCTTTGTAAGTCACATTGGAAAAAGGCATAAccaaactaataaataatatgactAAAATTGCTCGGAACTGAACCAATAAAACCAGTAAGGGAAATTgaatcataaatataaaaaacttaAACCTGGATCTATATGTGTAAGTCAGATTGTTCAGTGAAAGGGATTTTGAAGTGGtttccagttatttaaaaatgtatttgtagttGCTAGACTATGCCTCAGATAATTATattctgaatttaattattttattatatcaaattttaaaacatcacaagACATTTCTTCTTCAAGGCTATCTCAGTTCCCAGTACTCTTAAAGAAAGACACACTTCAGACAATGGGAAATATCTGGCTTTGGCAATCTGTtgggaaaatacatacatggaGAATGGAGAATTTGGTGGAAGACACAAGGCTTTCACTATAATTGATCTTTTCCATTCCTTTCATACTTTCATGTCAGAAccaaatgatttttttaaattgcttcttTTTGTGTTATAGATTCCTGGAGAAGAAAAGTCGATGCAACCTACTCAGGatgggttttaaaaacaaactctaATTATCTGTCCAGAATGTACCTGCCAAATATGTGTGAAAATATTCCTCTTAGAGATAATTGACAGTAGGCAGTTCCCCTGTTGACATAGTCCAGAGAAGGACTAAGCACTCTCCCTCTGCTAATGTATGAGAGCACAGTTcaggaaacatgtttttttatctggAAGGAACTCTTTAAGCCTTGAGTGCATTTAAgacatattcattatttaaaacttCAATCGAAATCCCTctattaaagcaaaacaaagcaaggATTCTAGTTATGTAACATTTAACTTGATGCATTCTGatatgattatgtatttatattgtgtaaaaACTATTCATATTAAATCCAGATCATcgaacattatattattattattattattattattagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtatttaattGATTGTAATTGAGCCAGGGTAACTGAtccagtaataataaaaataatacaagtacaagTAGTCCAGTgtactttgtgtatttttgtttctggtcACTGGATGGCACCATTAAAACTAAGATGAAAATGGAATACGACTTTTTGTTTCAAACCAAACATCACAAGCTACGCATCAAGCAAAATATACATTGCACATGATTAGTTATAGATATCTGCAATTGTTTGGATACTAATAAGAACGTGGAGAACCTCTCCGGTATTTTGCAATGCAATTTGTGTCGGATTGAAAAgcgaagttgaagaaagtgaaaaataacagCATTATAGAGTGGCAGAGCAGCAAACACGATTAACATGACCTTGTAAATATCATGTCGGAAAACCAGATGTCACACTCATgcatttatacaaatgtatgtatttactgtttaataaaaaatg

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01291 CPB1; carboxypeptidase B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67787 lncRNA upstream 152173 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 152731 23663393 ~ 23664094 (+) True G54237
TU67740 lncRNA upstream 367348 23447154 ~ 23449477 (+) True G54194
TU67717 lncRNA upstream 581796 23234623 ~ 23235029 (+) True G54174
TU67706 lncRNA upstream 625243 23169441 ~ 23191582 (+) True G54166
TU67815 lncRNA downstream 65040 23890127 ~ 23894287 (+) True G54264
TU67901 lncRNA downstream 340703 24165790 ~ 24166061 (+) True G54328
TU67939 lncRNA downstream 452818 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 958423 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 1346914 25172001 ~ 25172864 (+) True G54547
AMCG00009056 mRNA upstream 154612 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009053 mRNA upstream 962331 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009052 mRNA upstream 1111428 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009050 mRNA upstream 1130213 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009049 mRNA upstream 1168349 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009059 mRNA downstream 135 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009061 mRNA downstream 47621 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009064 mRNA downstream 204305 24029392 ~ 24049944 (+) True AMCG00009064
AMCG00009066 mRNA downstream 238755 24063842 ~ 24071730 (+) True AMCG00009066
AMCG00009069 mRNA downstream 375270 24200357 ~ 24206521 (+) True AMCG00009069
TU67408 other upstream 2522924 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2541471 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 2648250 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5262865 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 5896772 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 58230 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 987531 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 1089942 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1759805 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3788496 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile