RNA id: AMCG00009060


Basic Information

Item Value
RNA id AMCG00009060
length 6459
RNA type mRNA
GC content 0.42
exon number 29
gene id AMCG00009060
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23825229 ~ 23863035 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGACCTGGTGACGTCTTTTCCGGCTGAGTTCACGCAGACGGTTATTGTAAAGTCTGTGTAGATTGTGCGCAGACTCGGCAAAGTATGCTTGGCGTTTAATTTCTTTGCGCTAAAACGATTGGTTCACGGAGTAAAACTAATTTTCTATTGGTTGAGTTGAACATCAATCCGAGGATTCAATCTGCACGTCTAAGCGCCACATTGTTATTACGCATTTACTTAAAGTAACTGTTTACAAATAACATCAGTTCGGTGGAGTAATTTTTTAAAACGAACTAGTCTGTATTTGATTTGAAACGCTCTGAGTCTTCTTGCAGAGCTTGGCTGGAGGAACATGAATCTAACTCGGCGTGCGGGACAGTCTCTGTCTTTTGTAAATTTCTTCGCCGATGAGGAGCAATCCGTATCACTGTCCCAGGCCATTAACAGTCCTGATGCGGATGAGTCCGCTGTGACTGGAGATGATGATCAAGATGCTCGAGAACTGTTCGGAGTGCTGCGAGGCAGTGTTGTAGGGTTACGCTACTACACTGGAGTGGTCAACAAAAGGGAAATGGTCTCATTGGTGCGAGAACCTCAAAACCCTTATGACAAGAATGCAGTTCAAGTGAACAATGTGAATGGACACCAGGTGGGGCATATCAAACGAGAACTGGCAGCACCAATAGCTCACATCATGGACAACAACCTGGCAAAGGTGGAGGGCATTGTTCCTTTTGGCGTTACGAATGCATTTACAATGCCTGTTCAGTTGTACTTCTGGggcaaagaagaaaataaagcagaagtAATTAATAAGCTTAAGGGGCATGGATATAAACTCGGTCCTGCTTTAGAAGGATTGACATCAAAGGCAGAAAAACAACCGTGGAGCAATCCGTGGCAGTCTGGTGGAAGTTTGGCTGCTGTACCCATGACACAGGAACAGTTGAAGAGTGCCTTTGACAAATTGTTTGAAGATCTGATGGAAGAGAAAACACAGGAGATGGAACCAACTAAAGCAGTCAGGACTCCTCTACTACCACACCAAAAGCAGGCACTTGCTTGGATGGTCTTgcgagaaaacaacaacaatcttcCCCCTTTCTGGGAGcagaataataatttgtatttcaatGGTAAAACACTTACCACCATTGCATTGATTCTCACCAACTTTCACAATGGGAAACCCCTGCCTGTGGGGAAGACCGAAGTAGAGAAACCGGCAatggaaaaaaatactattcCTCATCCTCAGACTTCAGGATCCAAGATGGATATATGCAGGAGTCAGAAAAGGAAAGAAAGTGTACAGTGGAAGCTAAGCCTGGGAAAAATTCACAGGATGCAGTTTGCTCAGAAACTTCAGGCAGCAGTTCATGTTCAAAAAGgtgGTTGTTCTACCCTGAAGGAAGATATGAATTTTGCTGCTGTCCTTGGGGCAGCAACAGCAAGCTCTTCAAAACAGAAGGTCCAGAAAAAAGGTGATGCAAAACCATCCCTGAAAAAATCTAATATCAAAGATGCCAAAGCAACCCTTATCATTTGCCCTCTGTCAGTGCTCAGTAACTGGCAGGAACAGTTTGAGCAGCATGTTGGTGTGGATGTGAAGctcaatgtgtatgtgtattatgGCACAGACCGAAGCAGAGACTCCTCTTTCTTAGCGAAGCAGGATGTGGTGCTGACTACCTACAATGTGCTAACTGTCGATTATAGGaacAATAGCCCCTTGCACAAAGTGGAATGGCTGCGGGTCGTGCTGGACGAGGGACATGTTATCCGAAATCCCAGTGCAATGCAGACTAAGGCTGTGCTGGATTTAAAGGCTCAGAGAAGATGGATCCTAACTGGCACCCCAATCCAAAACTCCCTGAAAGATCTGTGGACGTTGATCGCCTTCTTGAAGCTGAAACCCTTTGATGTAAAGGAGTGGTGGAACAGAACCATCCAGCGGCCTGTTGCAATGGGTTACAAAGACGGACTCAAaaaCCTCCAAGCCTTGGTTAAAGGCATTACACTGAGAAGGACAAAAAGAAGTAAAATCAAAGGCAAGCCCGTGGTGGAGCTGCCAGGGCGGACAGTGTTCATTCAGCACGTGACTCTGAGCGAGGAGGAGAGACTGGTATATGACACTGTCAAATCTGAAGGAAAGACTGTCATTGGCCAGTATTTCCGTGAAGGGACTGTCTTGAGCAACTACGCTCATATTTTAGCCATTCTGGTCAGGCTTCGGCAGTTGTGCTGCCACCCTCTTCTAATGGGAAACTCCCTGAGCGCAGCAGGACCAAAAGACCCCACAACCACCGAATTGAGAGAGAAGTTAATAAACCAGATACAAATGGTTCTGAACTCTGGTTCTGATGAGGAATGTGCCATCTGCCTCGATTCCCTGAGGCTGCCTGTCATAACATACTGTGCTCATGTGTACTGTAAGCTCTGTATCTGTCAAGTCATTCGCATTGAGCAGAAAGCTAAATGCCCTCTGTGTAGGGCAGACATCAAAATCGAGGAGCTGGTTGAATATCTTGGAGAGAAAAACGAATCTGGATCTGAGGACAGCAGTTCCAAGTGGATGTCTAGTTCAAAGGTTGATGCCCTAATGAGCAACTTGCTGAAACTTCGCAAAAAAGATCCTAGCATAAAAAGTTTGGTGGTGTCTCAGTTCACAAAGCTTCTGTCTCTCATGGAAATCCCATTGAGGGAAGCAGGGATTTTGTTTACTCGTCTGGATGGTTCCATGAACCAGACTAGCCGAGTGGCGGCCATCCAGGCTTTTCAGAGCACTGACCCTGGAGCGCCGACCATCATGCTGCTGTCACTGAAAGCTGGCGGAGCCTGGAATCCTGCAGCTGAAGACCAATGCTTTGACAGATGCCACAGGCTTGGTCAGAAAAGAGATGTGATAATCACTAAGTTCATTGTGAAGGACTCTGTTGaagaaaacatgacaaaaatacaaaagaagaaGCAGGACCTTGTGGCAAAAGCTTTTGGAGGCCAGCACACACATGAGAGAAACCAAGCAAGGATTGAGGAAATTAAGGCTTTGATGGAAATCTAGTCATCAGATGTGACCAACAGAATGTGGATATTgggttcaatgtttttgtttgtctgcatatatatattttcctgtttatgtgaaagaaaagaaaaaaaaacccttTATATTCAcagaattgtttaattttgttaaatgaGAGCAGTGAAGCTTTATGGAAGTGATTTGTCCAATTTAAATAAGTGCATAGATGCATTTCTATCAATGTAACCACCTCCACCTCCAGATTTCACTTTGCATCTTAATACCcccaaaaaatgcatttttagcTCCAGAAACAGTTAAGttacaaatgtgcattttaatcaattaaattccTACCTTACTGAAATCACTTAATTCAAATAAGATGCAATGGCAAATTTCTCATGCTGCAGTTACCATTTTTCTCTTTACTTTTTCATAAGGGTTGTATTTCAGTTTGAGGCTTTCAAGAAAACCAGAATTTGCTCCTGCAGGACAGGAGGTTCAAGGTACATGCAATATGAAAATCTGTCCATTACTTAAATATCAGACATGGATACCTCCAAAATTggagagggaaaataaataggtTGTGTTCTCTGGAAAGGAACAATCATgaatgagcttttttttttttttttttttttttaaaggaacagtCCTTTATCAATGCCCAATTGTTTGCCTTCCAAAATGCTGCATTGCATAGACACGATCATAGGTTCCACCTCCCCCACATCTATCTGCAAGTtgaaggaacattttaaaaggtcttAAATGAACAGGTTCTAGACTCTTGGAAATCACACTCCCCTACTTATGGCTGcaacattttaagttttaataaatacattattgatcAGTGTTCTCACATACTTAAATTCATTCTGGCGTTACTACCTGCATCTCCAGGTTAATGCCGAGGGGAGGGGgaaagagaaaactgaaaactagaagcatttgtttttacacaaagtaatctatatacatacacatttataaaagagGTAAGGCTATTGGGTCAAATCAGTTCTAGAAGAGTGACCAATATTTATGTTCTATAGTAAGTCTCTATTCTGAAACTGATGggtataaaattaaatcaaggtTCCCTTCCATTTAGCAGAACCTAAAATAACCAACTTGAGCCCCTCTACAAACAAAGAGGCAGGGCAGGtggaattaatacaaataaacaggcTCACATCActagttttattttgcagataaAGTGCCATGGTACAGAAAACATGAAGGATTTCAATTATCCCAGTAGTGAACTTGAAATTACCTTCACACTTCAGAGCCAGTAGTATGCACAGGATTGAACTGCCTTTAACATTTCTAACATGGAGTGTTCCTGTGGTTGTAAGGGATCACAACAGTGTTCATGCATGAAACAGTTGGAAAGGTACAGCAACAGTCTCGGCCAGTCAGTGCAGCAGTCAAATGTTCTGTAAACAAGAAGTTAAGCTAAGGCAGCAACAGGGTCTGTCCCACTGGTCTTAAGGATTGGTGAGGGTTAGGGGGGAGGGGGCAACAGAAGAGAAACATCACCTAAAACAGTTACAGGAAAGCTAAGGGTTTTGTCGTTGTTTAAATGTCAAGTGCTGCTTCCTTTATAACTGCTCAGtaataaacatgcaaaatatatacaaagagGTTCTAGAGAGTTCACATTGTCACTCAAGGTATCTTGGCATACCACATGTGTGGTTGGGGGAGTTGAAGGCCATTCTGTAAAACTTAAAATCGCCAACTTCAGAAACAGTTTTGGAAAAAAGTTTGAACTACATTTCATTATAAGTCACCTGACCAATCGTTATTGCAAGCCattcaatatataatttagCATACAGAGTTAGGAACAGTGGTCTCAGATACACTCTTAAAAGTGTTGTATTGCATTAAATAGGTCAAGGGGTAAGTCACATTAAGGCAACAGTCAAACTTGCGAATTGCTAAACTTTAGTGAAGTCTAATTTCCTGAATTGGTTATTTCTACATGGTCTTGCTTCAGTGGCATAGGTTTTTACCAAAGAGATTGCAGAAGTCAGACTTGCTACATTAAAAGGGTATTGGTTGGTTACTTTGATCAGGACTTTGCCTCTTTGCAAAAGAGAATCCTCTACCAGTAAATAGAATCGGGGAGAAAAGGGGAAGgggaccaaaacaaaatgtccacaTTATATACATGTTCAACCTCTTTAAATGTCACTCAGCCAGTCAGTCCATAAGCAAAGAATATAGACTGTTCTGCATGTGCTTTAATACCCTTTTCAAATCAATCTGTACAACTGCAAAATCTTCTCGATCTTTTACTTTAGGAAGGAGTCCAGCTTTTTCTGTATATTATCAAAAGAGTCCTCTCCCATGTAGTCCGCTTGTCCCTGTTCCCACTTCTGCTTACGTTCCTCTGAGGtgatgggaggaggaggaggaggaggcggggtTAAGTTAATGTGCATCACTCCCTCACTTATTTCATCCGCTTTGCATCCAGTCTCGGATGGCTTTATTACACCCTGCTCTGTAAGCAGAGGGATGACAGAGGTGGAGAATATCTCCCACCACATGTTCAGGTAGTTCGGATGGAGTGTGGAAGACTCCTGGAAGTCACCTTGAACAGTTTTTGTCTTGGAGTCATAACTATAATTCCATGGCTTAACTTTACCCAGGAAATGGACCACCTTGGCATTGGCACCATACCTCTTAAATGCTGGAAGGTAGGAGTAGATTGCGATGCTACTTAGGTTGTAAATAAAGGGAAGATGTTTGGATATGTCTGCAGTTGCCCAGTTGCTAAAAAAGCTGTTCAAAATCCCCTGGTCCCctcctgaaAGCTTCCCTTCTCAGTGCAGAACTTTATGAGTTTTTCATACGTTTCATTGGAAGGACTAAAGACAAATACTCCTGAATTGAAACAGTCAGGCCAGCCTGGGTCTGGAGCTGCAGACAACTCTTTCCGTTCAAACAGCTCATCAATATTTGACAAAACCTGTGTGTCTGCATCCATAAAAATACACTTAGAGTACTGTGTCAATGTCCAGCAATGGAGTTTAGTCAACGTGACACCCAGCTCTGGCCTTTGCATCAGAGTCAAATGTGCCGAATCTTTACTGTCTAGCACGTCCACCTGCATAACTTCATCAAATACCTTCTGAAGACACTGTACCTCATCGACTGGGAGACCTGAGGAGTTATCAGCACCACCAGTTGTCTTGACGTTTTATGGTTCCTCAATGACACGCCAAGCACCAGGGCTCCTTTGCCATAGATGTCATTTGTGGCTAAAGTTACAAAGGCCTGATCTGTCATGGTTCGTTTGGAGTCAAAGCTACTTTGTAGCCCAGACGCAGGAGCAAGTAGACTTTATTCTGGTCAGAAACAGACTAATACTTCAGCAGTAGGTTTATAGTAGGAGGCAGGACCATTTTTATATACTCC

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0043167 ion binding molecular_function

KEGG:

id description
K15711 SMARCA3, HLTF; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67824 lncRNA downstream 5439 23817062 ~ 23819790 (-) True G54273
TU67722 lncRNA downstream 522544 23302454 ~ 23302685 (-) True G54179
TU67711 lncRNA downstream 633734 23180327 ~ 23191495 (-) False G54168
TU67710 lncRNA downstream 633734 23181156 ~ 23191495 (-) True G54168
TU67708 lncRNA downstream 655400 23169439 ~ 23169829 (-) True G54167
TU67953 lncRNA upstream 414848 24277883 ~ 24278536 (-) True G54363
TU68013 lncRNA upstream 764804 24627839 ~ 24710773 (-) False G54408
TU68011 lncRNA upstream 782595 24645630 ~ 24658532 (-) True G54408
TU68014 lncRNA upstream 790579 24653614 ~ 24658532 (-) False G54408
TU68021 lncRNA upstream 801270 24664305 ~ 24666234 (-) True G54415
AMCG00009057 mRNA downstream 169079 23645454 ~ 23656150 (-) True AMCG00009057
AMCG00009055 mRNA downstream 356129 23450545 ~ 23469100 (-) True AMCG00009055
AMCG00009054 mRNA downstream 422737 23378607 ~ 23402492 (-) True AMCG00009054
AMCG00009051 mRNA downstream 1007236 22721882 ~ 22817993 (-) True AMCG00009051
AMCG00009048 mRNA downstream 1159044 22648694 ~ 22666185 (-) True AMCG00009048
AMCG00009062 mRNA upstream 31059 23894094 ~ 23914458 (-) True AMCG00009062
AMCG00009063 mRNA upstream 97564 23960599 ~ 23961852 (-) True AMCG00009063
AMCG00009065 mRNA upstream 188715 24051750 ~ 24062621 (-) True AMCG00009065
AMCG00009067 mRNA upstream 213364 24076399 ~ 24088941 (-) True AMCG00009067
AMCG00009068 mRNA upstream 244170 24107205 ~ 24111579 (-) True AMCG00009068
TU67499 other downstream 1641664 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 3561144 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 3561144 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 5956533 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 6078186 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 1290231 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 1310642 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 2930506 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 3750563 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 5195249 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile