RNA id: AMCG00009061


Basic Information

Item Value
RNA id AMCG00009061
length 2223
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00009061
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23872708 ~ 23885824 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCTGTGAGAGGGGGGAAGGTCATATTGTTTTAACACTAGTAGTAGTGTGCTACTGATTGAGAGCAACACAGCTGAAGTTTTTCCACAAGAAAAGATGACTCCCTTTCCTTTTATTAAAATGGcgtttctcctgttttctttttctttgacttTAGTTTTAGGGTTCGGGCTCCCTGAAGCACTAAATGCTGTTGCTAGAAACTGCGGATTTACAGAAGCTAGCGTAACGCACGGCATCGTTCTGGTGTATCTAATGTTCGTCTGTTGTGTGGCAGTGCCTTCCATTCCAAGAGGGTCTTTGAAAACTGAGGGAAAGGCAGTCTTCATCACAGGTTGCGATAGTGGATTTGGATTTGCTTTGGCAAAGCATCTACATGCACTGGGATTCACAGTGTTTGCAGGATGCCTTCTCAAGGATAAGAGTGGGACAGGAGCATGTGACCTGGAGAGTATGAAGTCAGACAGGATGAGAGTGGTGCAGCTGGATGTGTGCAGCGAGGAAGTGGTTAATCAGGCTGTGCAGTTTGTCAGGGAAAACTTAAAGGATCCAGAGAACGGTCTGTGGGCACTGGTCAACAATGCTGGAGTCTCAACCTTTGGAGAGGTAGAGTTCACAAGCATGGAAACATACAAGCAGGTTACAGAGGTGAATCTGTGGGGCACTATCAGAGTAACAAAAGCCTTTCTTCCCCTGATCCGGAGAGCTAAAGGGCGAGTGATTAACCTCGCCAGCATGTACGGAAGAATGAGCAACGCCCTTCGCTCCCCATACTGTGTGTCCAAGTATGGCGTGGAAGCCTTTTCCGATTGCCTGCGCTACGAGATGCGAAAATGGGGTGTCAAGGTCATTGTCATTGAGCCTGGCAACTTCATCGTGGCCACGGGCATCCTCACACGTGACATTGTCTCCACCACAGCTGACAAACTGTGGAGAGAGGCACCCAAAGTGGTGCAGGAGGATTATGGGAAGGCCCACTTCGATCGCCACATTGCAGTGGTTAAGTCTTACTGTAACAGTGGCCAGAGGGACACAACACCCGTTATCCAGGACATCTCTGACGCCATCATGTCCTGCCACCCCTTCACTCGCTACAACCCCATGGAAGCATACTGGTGGATTCGTATGCAGATGATGACCCATCTTCCGGCTGCTATTTCCGACaagctgtatttttaaagccaGGGAATCTTTCGTAGCCACAGATACACTGAGATTATAGCAGAGCATCGGTGCTGTATGATGTAACGGTCACATATCGTAACCTACTTCCACACAAACAActttaaaggtgtttttttttttttttttttcccattcacCTACAGATCATAAAATGCTTACAAGCTTTTCTTACAGGATGCCATTTATAATACCAGTCATTTTTAGCCTGTTATAAATCAGTTTAACTAAGCACTTTGTGCACGTGTCACAGTATGAAACAGAAACCAAGAAAATGCCCCTTGCCAGCCAGTGTAATTTCTCAATAAATTTATTAGATTGTCCAGCTCTAATAAATGGTTAAAGCATTCAAATCAGACTGTTTATGTTGGCATGGTTATTATTTCATATGGTCATATTATGAgcccatttatttttctggcatTTGGTGGGCACTTTCCAGTAAAGGGAACCTCAGAATAGCTACAGCTCCCTGTGGGTACATTATTGTGCTTACTagaataaaatgcttttgaCAGCAGTGAGAGAAGCACATCGATTTGCtgcctgctgtgtgttttgttgttgtttttgttagtccaagaaaaaaaaaaaatactaaaatgccCCATAGAAATAGTTTGCATCTTAAAGCTATAACTGGATCAAACAGTATTTAGTCTTATTTGTGATTGGTGTTTAACAAAGTAGGCTGTTTTGTtagttatatataatttgtaattcaatatttaaccTCACCAAGAAATAATTTTAACCATATTGATATAATGATTATCCAGCACACAAATTGGGATACTGGGAATGCAAGAtcagtaaaatgtatacagCATTTCtaatccaaaatgttttttgcaaTGTTCTTTTGAATATAGCAGACCAAGCAACAAATTCGGAacatttttaatctaatttactACACTGTCagttcaaagaaaacaaaaagctgtagATTTAAAGGTACTAAAATTGCAAAGACACCATCTCCCTCCTTCACCCTTCCCAGTATAAACTGACACTGAAACCATAAatgttcattaaaat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00019 E1.1.1.30, bdh; 3-hydroxybutyrate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67787 lncRNA upstream 208056 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 208614 23663393 ~ 23664094 (+) True G54237
TU67740 lncRNA upstream 423231 23447154 ~ 23449477 (+) True G54194
TU67717 lncRNA upstream 637679 23234623 ~ 23235029 (+) True G54174
TU67706 lncRNA upstream 681126 23169441 ~ 23191582 (+) True G54166
TU67815 lncRNA downstream 4303 23890127 ~ 23894287 (+) True G54264
TU67901 lncRNA downstream 279966 24165790 ~ 24166061 (+) True G54328
TU67939 lncRNA downstream 392081 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 897686 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 1286177 25172001 ~ 25172864 (+) True G54547
AMCG00009059 mRNA upstream 31726 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009058 mRNA upstream 47621 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009056 mRNA upstream 210495 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009053 mRNA upstream 1018214 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009052 mRNA upstream 1167311 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009064 mRNA downstream 143568 24029392 ~ 24049944 (+) True AMCG00009064
AMCG00009066 mRNA downstream 178018 24063842 ~ 24071730 (+) True AMCG00009066
AMCG00009069 mRNA downstream 314533 24200357 ~ 24206521 (+) True AMCG00009069
AMCG00009070 mRNA downstream 326592 24212416 ~ 24216847 (+) True AMCG00009070
AMCG00009072 mRNA downstream 332980 24218804 ~ 24221967 (+) True AMCG00009072
TU67408 other upstream 2578807 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2597354 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 2704133 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5318748 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 5952655 17917666 ~ 17920053 (+) False AMCG00009009
TU68049 other downstream 926794 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 1029205 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1699068 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3727759 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4880630 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile