RNA id: AMCG00009064


Basic Information

Item Value
RNA id AMCG00009064
length 5457
RNA type mRNA
GC content 0.44
exon number 32
gene id AMCG00009064
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24029392 ~ 24049944 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAAGCTTGGGATTTTTGCTGGGGTGCCAGTGGAAGGCAAACTGCCGTACAGACCAGAGGGACAGTTGACggaCTCAACTAATGAGTCTGGGCAGGCTGAAACAGTCAGTCTGGGAGTCAGTGTGAGTGAGCTGGAGGACACTGGAGAGGTGAAAGGCAAGAGGAAGAGGGGAAGGCCTGGGAGACCACCGTCTGCCAACAAGAAGCCTCGAAAGACCCCTGCTGAAAAAAGCCAAGTTGGAGCCCCCCGGGGAAGAAAAGCCAACGGTATCCCCCAGCAGAATGGCGAGGGAGACCCTGTAACCCTTTTTGAAGTGGTCAAGATGGGCAAGAGTGCTATGCAGTCTGTTGTTGACGACTGGATCGAGTCCTACAAGCAGGACAGAGATATAGCACTTCTGGATTTGATCAACTTCTTTATTCAGTGCTCTGGTTGTAAAGGCACAGTGAGAATAGAGATGTTCCGGAACATGCAGAATGCAGAAATCATCCGAAAGATGACAGAGGAGTTTGATGAGGACAGTGGCGATTACCCTCTCACTATGCCAGGTCCTCAATGGAAAAAATTCCGGTACAATTTCTGTGAATTCATTGGGGTTCTGATCCGGCAGTGCCAGTACAGTATAATTTACGATGAGTACATGATGGACACGGTGATCTCTCTGCTCACTGGTCTTTCAGACTCACAGGTCAGAGCCTTCAGACACACGAGTACACTGGCAGCTATGAAGCTTATGACCGCGCTCGTCAATGTGGCTTTGAATCTCAGTATCCATCAGGACAACACGCAGCGACAGTATGAGGCAGAGAGAAATAAGATTGCTGGGAAGAGAGCAAACGAGAAGCTGGAGTTGCTGCTGGAAAAGAGGAAAGAGCTGCAAGAGAACCAGGATGAGATTGAGAACATGATGAACTCAATTTTTAAGGGTATTTTTGTTCACAGATATAGGGATGCTATTGCTGAGATCAGAGCTATTTGTATAGAGGAGATTGGTGTGTGGATGAAAATGTACAGTGATGCCTTTCTAAATGATAGTTACCTGAAGTATGTTGGTTGGACATTGCATGATCGAcaagGTGAAGTCAGGCTGAAGTGTTTGAAAGCCCTTCAAAACCTTTATACCAACCGGGAACTCTTTCCAAAACTGGAACTCTTTACAAACAGGTTTAAGGATCGTATCGTGTCCATGACCCTTGATAAAGAATATGATGTTGCTGTGGAGGCCATTCGATTGGTCACATTAATTCTGCAGGGCAGTGAGGACGCCCTGTCCAATGAAGACTGTGAGAATGTTTACCATCTGGTCTACTCTGCTCACCGCCCTGTGGCAGTAGCTGCGGGAGAGTTCCTCCATCGGAAATTGTTCAGCCGACATGATCCCCAAGCAGAAGAAGCCTTGGCTAAAAGAAGGGGGAGAAACAGCCCCAATGGGAATCTTATTAGAATGCTGGTGCTTTTCTTCTTAGAAAGTGAACTGCATGAGCATGCTGCGTATTTGGTGGACAGTTTATGGGAAAGCTCTCAGGAACTTCTCAAAGACTGGGAGTGCATGacagagctgctgctggaggagcCTGTGCAAGGCGAGGAAGTGTTGTCTGACAGGCAGGAGAGTGCACTGATAGAGCTGATGGTTTGTACCATTCGACAGGCAGCAGAGGCACACCCCCCAGTTGGCAGAGGAACTGGGAAGAGGGTTCTCActgccaaagaaagaaaaacgcAGATTGATGACAAGAATAAATTAACAGAACACTTCATTATGGCACTTCCAATGTTACTTTCTAAGtatcAAGCTGATTCTGAGAAGGTGGCAAACCTCTTACAGATCCCTCAGTTCTTTGACCTAGATGTGTACAGCGCTGGGAGGATGGAGAAGcaCCTAGATGCCTTGTTGAAGCAGATCAAGTTTGTAGTGGAAAAGCACACAGAGACGGAAGTCCTGGAGGCGTGCAGTAAAACGTACAGCATCCTGTGCAGTGAGGAGTATACCATCATGAACCGAGTGGATATAGCCCGCAGTCAGCTCATTGACGAGATGGTGGACCGCTTCAGCCACTCTGTGGAAGACTTGCTGCAAGAGGGTGAAGAGGCGGACGACGACGACATCTACAACGTGCTTTCAACTCTGAAGAGGCTGACCGCATTTCATAATGCACATGATCTCACAAAGTGGGACTTGTTTGGGAATTGCTACAGGTTGCTGAAGACTGGTATTGAACAAGGGTCAATGCCAGAGCAGATTGCAGTGCAGGCTCTGCAGTGCTCACATTACTCCATTTTATGGCAACTAGTCAAGATCACAGAAGGCTCCCCCTGCAAGGATGATCTCATTGCACTAAGGAGGGTTGTCAAATCTTTCCTGGCTGTTTGTCAGCAATGCCTGTCGAATGTCAACACTCCAGTGAAGGAGCAGGCTTTCATGCTGCTGTGCGACCTGTTGATGATCTTCAGCCACCAGCTGACGACGGGGAGCAGGGAAGGCCTGCAGCCTCTGGTGTTCAACCCAGACGCGCCGCTCCAGAACGAGCTCCTCAACTTCGTTCTGGACCACGTCTTCATAGATCAAGATGAGGAGAACCAAAGCATGGAGGGAGATGAAGAGGATGAAGCTAACAAGATTGAGGCCTTACACAAGAGGAGGAACCTATTGGCAGCCTTTAGCAAGCTCATTATCTATGACATTGTAGACATGCATGCTGCTGCTGACATCTTCAAACACTATATGAAGtaCTACAATGATTATGGAGATATCATCAAAGAAACGCTAAGTAAAACCAGGCAAACGGACAAGATCCAATGTGCCAAAACTCTCATCCTAAGCTTGCAACAGCTCTTCAATGAGCTTATTCAGGATCAAGGCCCTAACCTGGACAGAACATCCTCTCATGTCAGTGGAATTAAGGAGCTGGCTCGCAGATTCGCACTAACATTTGGTCTGGATCAGATCAAAACGAGAGAGGCTGTTGCTACTCTCCATAAgGATGGTATAGAGTTTGCCTTTAAATATCAGAACCCCAAAGGACCTGAatttcctcctccaaacttgGCTTTCCTTGAAGTCCTCAGTGAATTCTCCTCCAAGCTGCTTCGTCAGGACAAGAAAACTGTCCACTCGTACCTGGAGAAGTTCATGACGGAGCAGATGATGGAGCGGCGCGAGGATGTGTGGCTGCCTCTAATCTCCTACAGGAACTCCCTCCTGACCGGTGGAGATGAGGACCGCCTGTCCGTCaccagcggcagcagcagcaAGGAGAGTGTCGAAGGCTCCTGGCTCATGAGGAACGACACCATTCAGACCCCAGGGGCACTGCAGACGCCACAGCTGACCTCCACCGTTCTCCGGGAAAACCCCCGGCAAGCTGGCGAACACATACCAGATCAAGACTCTGAGCCGGGCTCCGAGACCGACTACGTGCACAACCGTGGCCTCATGGAGGATGACGCGGAGCCCATCTTTGAAGACGTGATGATGTCGTCACGCGGACAACTGGAGGACATGAATGAGGAGTTTGAGGACACCATGGTCATCGATCTGCCCCCTTCAAGGAACAGGCGAGAGAGAGCAGAATTGAGACCAGACTTCTTTGACTCTGCAGCTATAATAGAAGACGACTCGGGTTTTGGGATGCCCATGTTCTGAAGAACCAGGAAAACATTTCAAGACGAGAACTGAAGTGTGTTTGGAGCAAGGGGCCTTCATACTGTGATTGCTTGTTATAAACATTCTAAAAATTGATCaactttattttgacaaaaaaaagaaaagaaaattaaataaaaaagaaatcgtCAGTCAGAAGATGCAGAAAAGGATCAAAAAGCTTGTTGCTCGTATAGTGACTGGTGGTGGTGCCTCCCAGAAATGGGTAGCTGCAGAAACTGTCAACTAACAGTGGAGGTACTGGTGCTACGTTGGTTTAAGTAGGTGTTACTCCTCACAATAGACACCACACACAATAGTCTTTTCattgcagagagaaaaaaaggaaatcttaCAAttcatatgaaaaaaacaaatttctaaaaagaaaaatcagttaAACCCCATTCATGCTTAAAACGTATTCTTTGAAACCCATTGCTTATGTTTATTAGCAATGCAAGATATGTTGTGAATCACACTGGATTTGGTTAACATGTGGTACGCTTTAATTATCTTTGGAATTTAGATTCCACTCTCCCATGTTTTAAAGATGtaaatgttataattgtttCTGAGCACAGGTCTCTGATACTGTACAGTCACTTGCAGTTTGgttcagttttctttctgttcaccatatttttatatgcatataacaggtttatatatatatatacacagtccttaaaaacattttatttatttatatatatataaaaataaatatatttttttaaggactGTCCTTTACTTAGCCAAAAAATACTGGGTTTAGATTTTACCCCCTGGACATTCAGTAATTTTGTGGTGATAAATTAAGTGATTTAAATCATGGAAAACCTAATTATTCTTTCTTGATTAACACACTAATTTGTGTCTTCTAAAATATTCCTACTAGGTCTGAAATTGTCCCTGGGATTGGCAACATATCGGCCAACACAGTCCCTTGAAACGAGAGTACCTAGATTTTACAGAACTGGTTTTTGTTATCCGTGTTTATGGGAAAACGAAATCTTTGTATCTTTGTGTATAATATTGTTGAGATACTGCAGCAGCTTGACAGCTCAAGTTTTAATTCTAACAATTCCTGACAAACGGGATTCTTTTAAAGCAACACAACTTCTGGGTCTCATTTTACGACAAATAAAGACACCAAGCATTTTTACATGTACAGTTTAAGGTAGCTCTTAACGAGTATTTTCCAGGAAGCCACACAGATCATTTACCCaggtttttaaacaaataaagtaaaaaaatattttgaattttagTAGTTTTAGTATGAAGTTTTGAATCAAGTGAGATTTTTGTCAAATGTTTGTACAGTTCTATTTGGACAGATCTGTTGCCAAATGATAGTGGACAACATGCTAATCCAACCACTGGCAAGTCAGGACTTGTTTTGACTgcagtaaaattaaatgaagtCTAGAATGTGTAATGGATTGAACTAGTTAACTAGTCCTGAAGTGTGTGGttggtttaaaatgttaccaCTGTAGTTCTGTGGGCATAGAAGCATAATAGATGCTGCATGGTTTGAGTCCTAGTCGCAACAAACCTTGTGCTTCACAGTTACCTGTATCAAAATGGAATTCTAATTTAGACAGTATTGTAGAGTGCATAACAAGGTTTCATATTTAGGTACCTTCAAGGTGCATTTCAAATTCAGTTCAAATTCAATAGCTTTTATATTTCAAGTGTCTCCTTGATTGGTTTTGCTAGTAATCctgtaaattgtacattttcaatattaaaaaaaaaaaaagttttttttgtacaatttaAAGCTGATGCGTCACC

Function

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67815 lncRNA upstream 135105 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 364740 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 365298 23663393 ~ 23664094 (+) True G54237
TU67740 lncRNA upstream 579915 23447154 ~ 23449477 (+) True G54194
TU67717 lncRNA upstream 794363 23234623 ~ 23235029 (+) True G54174
TU67901 lncRNA downstream 115846 24165790 ~ 24166061 (+) True G54328
TU67939 lncRNA downstream 227961 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 733566 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 1122057 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 1258316 25308260 ~ 25308495 (+) True G54563
AMCG00009061 mRNA upstream 143568 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009059 mRNA upstream 188410 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009058 mRNA upstream 204305 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009056 mRNA upstream 367179 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009053 mRNA upstream 1174898 22850991 ~ 22854494 (+) True AMCG00009053
AMCG00009066 mRNA downstream 13898 24063842 ~ 24071730 (+) True AMCG00009066
AMCG00009069 mRNA downstream 150413 24200357 ~ 24206521 (+) True AMCG00009069
AMCG00009070 mRNA downstream 162472 24212416 ~ 24216847 (+) True AMCG00009070
AMCG00009072 mRNA downstream 168860 24218804 ~ 24221967 (+) True AMCG00009072
AMCG00009079 mRNA downstream 411994 24461938 ~ 24498489 (+) True AMCG00009079
TU67814 other upstream 53486 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 2735491 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2754038 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 2860817 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5475432 18550772 ~ 18553960 (+) True G53520
TU68049 other downstream 762674 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 865085 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1534948 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3563639 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4716510 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030916 True 3777 mRNA 0.50 33 NC_007113.7 25074849 ~ 25105483 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_08081989_08097935.mRNA True 5037 mRNA 0.47 32 CI01000004 8081704 ~ 8098754 (+)