RNA id: AMCG00009065


Basic Information

Item Value
RNA id AMCG00009065
length 2393
RNA type mRNA
GC content 0.48
exon number 15
gene id AMCG00009065
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24051750 ~ 24062621 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAACGTTCAGCATATCAAATCGTACTTCCTTCCTGGTCATGTTATTTGTACCCATAAGGTGTGCATTGGTACATGTATTACAGTACTGCCTCCcgttgaaacaatgttattcggTGATTCATTAACTGAATCCTTAactaaacataattattatattttcagagtttaaaTGCTACATTATATTCACTTTGTTATTGCAGCCTAGATAAATATATCTAAATCCAGATCAACATTCCAGTTGGGTTAACTGAGTCAATTGATGCATATCTATTgataaaaagatgaaaaaacaacaatatggtAATGCATGATGATAAAGTAAGGACCCTGACCAGTCGTGCAGGTCTCCCTCAACCAAACCTCTTTGCAGCTTGCGCTTTGCATAATCGGATTGCGTTCGTTGCGCAGATTTCAGCAGATCTGCACCTCTGAACCAATAATATTACAAGCAAAgagcagatctgtgcaaaacagCGGGAATCTGCACGACCCTACTGCGCTGTCGACCGTCCAGATTTGTTCCGCCGAGAGAAGAGAAGGAGCCGATTGGTTGAGACAGAGAAACCCCTTAGCCAATTGGAAAGGACTAAGTTGCAGGGTTACAACCATGGCGGCCTTCACTGTAGCGAGCCGCGGCTGTAGGTTGCTTTGCGGATTCAGATCCCTGTACAAGAAATTCCCACCGAGCCATGGAGGCGCCGTGGCCTCGGCCCGATCAGAGCTGCGGTGCCTGCCTCGACTGTACTCTGTCGGCCACGTTTCTGTGCAAGAACGGATAGACAACAAACGCAAGGCAGCGCTAATTGGAGGAGGTCAGAACCGAATAGACGCACAGCACAAGAGGGGGAAGCTGACAGCTCGAGAGCGGGTTGAGCTGCTGTTGGATCCAGACACCTTTGTGGAATATGACATGTTTGTGGAGCACAGGTGTTCAGACTTCGGGATGGAAGCTGATCACAATAAGTATCCCGGGGACAGTGTGGTGACTGGACAGGGCCGCATCAATGGGAGGCTGGTGTACATCTTCAGCCAGGATTTCACTGTGTTTGGAGGCAGCCTGTCTGGAGCTCATGCACAGAAGATCTGTAAGATCATGGACCAGGCAATGATGGTGGGTGCCCCAGTTATTGGCCTCAATGACTCTGGTGGGGCCCGCATTCAGGAAGGAGTGGAGTCCCTCGCTGGATATGCTGACATTTTCTTGAGGAACGTCATGGCCTCTGGGGTTGTTCCTCAGATCTCACTCATCATGGGACCCTGTGCTGGTGGAGCTGTCTACTCCCCTGCCTTAACTGATTTCACATTCATGGTGAAGGATACCTCCTATCTGTTCATCACTGGTCCTGATGTGGTGAAATCTGTCACCAATGAGGATGTGACCCAGGAAGAGCTTGGAGGAGCAAAGACTCACACTGCCGTGTCAGGTGTGGCCCACAGAGCTTTTGAGAATGACATTGATGCCTTGCTGAATCTCAGACAGTTTTTCAACTTCCTCCCCCTCAGTAACAAAGACCCAGCTCCAGTGATTGAGTGCCAGGACCCCAGtgatCGCCTTGTTCCTGGCCTGGACACAGTAGTCCCCTTTGAATCCACTAAAGCCTATGACATGCTGGATATTATTCAGGGTATTGTGGACGAAAGAGAATTCTTTGAAATCATGCCGAGCTATGCCAAGAACATTGTGGTGGGTTTTGCACGAATGAATGGCCGCACTGTCGGGATAGTAGGAAACCAGCCCAAAGTGGCGTCAGGCTGCCTTGATATTAATTCCTCAGTGAAGGGGGCTCGCTTTGTGAGGTTCTGTGATGCCTTCAATATTCCCATTATCACCTTTGTGGATGTTCCTGGATTTCTGCCAGGGACGGCACAAGAGTACGGAGGTATTATCAGACATGGGGCAAAACTGCTGTTTGCTTTTGCAGAAGCTACTATACCAAAAATCACAGTCATCACCAGGAAGGCATATGGGGGTGCCTATGATGTAATGAGCTCCAAGCATTTAAGAGGAGATGTGAACTATGCATGGCCAACAGCTGAGGTTGCAGTGATGGGAGCGaagGGTGCTGTGCAAATCATTTTCAGAGGGAAGGAGAATCAGGAAGAGGCCGAGGCTGAATATGTGGAGAAGTTTGCAAATCCATTCCCAGCCGCTGTCAGggGATTTGTGGATGACATCATTCAACCATCCAGCACCCGAAGGCGAATCTGCCGGGATCTGGAGGTTCTGGcaagcaaaaagcaaacaaaccccTGGAAAAAACATGCCAACATTCCTCTCTAAATGTGTGCCAGAGAAAATGATAGTTTGTAACAGCAGACTCCTCAATTCCTTTTTAAGAAAGGTTGTCTTGTAGATCtttaatacaatcaaataaaaagtttttcaacagga

Function

GO:

id name namespace
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01966 PCCB, pccB; propionyl-CoA carboxylase beta chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67839 lncRNA downstream 204747 23838114 ~ 23847003 (-) False AMCG00009060
TU67824 lncRNA downstream 231960 23817062 ~ 23819790 (-) True G54273
TU67722 lncRNA downstream 749065 23302454 ~ 23302685 (-) True G54179
TU67711 lncRNA downstream 860255 23180327 ~ 23191495 (-) False G54168
TU67953 lncRNA upstream 215262 24277883 ~ 24278536 (-) True G54363
TU68013 lncRNA upstream 565218 24627839 ~ 24710773 (-) False G54408
TU68011 lncRNA upstream 583009 24645630 ~ 24658532 (-) True G54408
TU68014 lncRNA upstream 590993 24653614 ~ 24658532 (-) False G54408
TU68021 lncRNA upstream 601684 24664305 ~ 24666234 (-) True G54415
AMCG00009063 mRNA downstream 89898 23960599 ~ 23961852 (-) True AMCG00009063
AMCG00009062 mRNA downstream 137292 23894094 ~ 23914458 (-) True AMCG00009062
AMCG00009060 mRNA downstream 188715 23825229 ~ 23863035 (-) True AMCG00009060
AMCG00009057 mRNA downstream 395600 23645454 ~ 23656150 (-) True AMCG00009057
AMCG00009055 mRNA downstream 582650 23450545 ~ 23469100 (-) True AMCG00009055
AMCG00009067 mRNA upstream 13778 24076399 ~ 24088941 (-) True AMCG00009067
AMCG00009068 mRNA upstream 44584 24107205 ~ 24111579 (-) True AMCG00009068
AMCG00009071 mRNA upstream 172924 24235545 ~ 24242433 (-) True AMCG00009071
AMCG00009074 mRNA upstream 202876 24265497 ~ 24293628 (-) True AMCG00009074
AMCG00009073 mRNA upstream 250533 24313154 ~ 24317576 (-) True AMCG00009073
TU67499 other downstream 1868185 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 3787665 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 3787665 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 6183054 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 6304707 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 1090645 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 1111056 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 2730920 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 3550977 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 4995663 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile