RNA id: AMCG00009066


Basic Information

Item Value
RNA id AMCG00009066
length 4906
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00009066
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24063842 ~ 24071730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctcctcctccttcttatatgcggagaggaaaaaaaaaaaaaaaaggaggggaGAAACCTCCATAGCTATAGCAGACTgttgaattataaatacatattaacatCAAACCGCAAGCAATcttggagaaggaaaaaaacgcATCCAGAAGCGAAGTGGAACCCGAATCAAGCAAACACACAACGTAGCTCCTGCTGGCTCTTCGAAACCCACCCGGGAGGACGGAAAAGGAGGGATAAatccaaagaaaagaaaaaaagcggCCTATTTTTGATCCAAATCTCCCGGAGCCCCTACTGCAGCCTCGACCCCGCCGGAAAGATCTCGCAGCGTGAAAATGGACGGGTTGAATTGCTAACTTTATTCTGCTGAAAGCAaaacaggaagtgtgtgtgtgagcccTTCGCTCAGTCGCTCGCCGGAGGTAAGGAGAGGAGAGTGAGAAGcggcctgttttgtttttgcaacgACACCGCCATGGCATGAGCAGCCGCGTCGGACAATAAACACCATTCGTGCCGGCCTGCTCACTCCCTCGCAATCCCTGAATGCATTGGATCAGAGCAGCATCGGGGGGAGGAAGAACGGCAGTGTTTGCCCCAGAAGAAAGCCCTCGATTCAAAGGGGCTCGGTTGGGATTTCTGGCCAGACTGCCTGTACTACCACTGGGGATTGGAAGCCAGGTTTGACTCGACCGTGAGCAGAGCGCCaccagtgttttgttgttgaatatagctaataataacaataataggaATAACGCGGCTGATATGGAAGACAAGTGATCCGCTTTGGGGAATCGAGACCAGGAGCAATAATCCGGACTTCTTATGGACTTTTAAATTTCATCAACTTCAGTTTTGGATGAACTGTTTTATGTGATGATGTTCATTTGGGCGTATTTCGTGCCATGGAAGAGAGGAAAGCGCTAAGCCAGACGGGTGCTGCGCTGCCGTTGTTTTACTCAATGTTTCTGAATGCAGACTGTTTTGTGTGAGTCCGTTGATTGCACATTTGTACATCTAATCAGTCTCCCTTACaccggggggaggggggggatacacagttgttgtttttttttatccccgGAATTGTGCCGCACTTCATTTTATTCACCCATGCTGAATGCAAGCTCCTCGCCCTCCTTGGAAACTGGGGTTGGAGTAGTACCGGACCTTGTCCATATTAACAGCATCTGGCTTCGATATCTTCCAGTGTAAACGGGCGGATCTGTTgcgtgttgttatttttctccagAACTGGATCTATCTGGTGCGAAGTTGCTGCGATGAACCCGGTGAATGCCACCGCTCTCTATGTGTCAGCTTGTCGTTCGGTGCTGCAGTGCGATCCGCGGGACCCACAGTCCTTTGCTGAGCTCTACAAGCTATTGCCATTCTTCAGGCAGTCTCTTTCATGCCTTGTTTGTGGGAACTTGCTGCAAGATCCCATAGCTCCAACCAACTCTTCTTGCCAGCACTATGTTTGCAAAGCCTGTAAAGGCaaaaagatgatgatgaaacCCTCTTGCAGCTGGTGTAAGGACTATGAAcaatttgaagaaaacaagcaaCTTTGCATTCTTGTGGACTGCTACAGAAAGCTCTGTGAGTATATCGCAGAGTCCCCCTTGGCTCAGCAAATTGCCAGTGCTGTTGGAGGCTCCCCTGATGTTTTGGCAATGTTGAAAGAAGGGCTGGCATTAATGGAAGGCGAGCCAGGAGAGTCCCACGTTTCTGTGTCACTAAAtctctcacattccccagcaccgTCGACCTCGGAAAACCACAATAGCACGCAGCTGGAGGCCTCCTCCGACCTTCAGGAACATGCTCCGGACCTGAAAGTCAGCACACCTGGCATGAATGGACTGCATGACTGTAATGGTCTGACAGTGGATGAGCTGGCAGCCAGCTTGCCCTCCCCTGGAAATGCACCTGCTACCATTGATGTATGTAGCACCGTGGAGGACCTGAAAACGGAACGATTTCCTGACGAGCTGCCCGTGTGTGAGGCTGTGGCTTCAGGAGAGCTGTGCACTGATGGCATTGACATATGTAGCTTCAGTGAGGAGATTAAACACAGCAATGACCCCCTGCTTTTAAGCATGGAGGAGGTGCTCCGAAGCCTTGAGCCGGACCCAGTTTCAGAGGACTGTCCGGGTCCGGGTGCACTGCAGTCTAACTTGGAGACTTCAAGTAGCCTCAACGGACCTTTCATTGAAACTAGACTATCCTCCCTTCCCCTGGAGTCGGGGGTCTTTGTCCCTTGTCATCCCCAGCCTTCCTCTGGTATCTCTTGCTCAGCAGTCACGCCCAAAGCAGCACGGCTGAACCGGAAGCGGTCACGGTCAGAGAGCGACAGTGAGAAAATACAGCCCTTGCCCATCTCCAGCATCATCCGGGGCCCCCCCTTGGCAGCAGCCGCCCCCGTGATGGTCAAACGGGAGCCCAAGGTAACAGTGCAGCCGGTGGCTACTGTGCCAAATGGGGGAACACCCAAGGTCAGCAAAACAGTACTGGTGTCCAGCAAGAGCATAAAGAAAAATCCTGACCACGGGGCCAAGAAAGCCTATTCCAAGGCCAAACAGGGAGTTTCCAAGACCAAGGACAAAACGAAAGACCGACTCCCCAATAATAACTTAATTCCAGGGAGTCCCACCAAAGTTGTGTACAAAAAGCCCCAGGAGAAGAAGGGCTGCAAGTGCGGTCGGGCCACCCAAAATCCAAGTGTTCTTACGTGTCGCGGCCAACGGTGTCCGTGCTACTCCAACCGCAAAGCCTGCTTGGACTGCATTTGCCGGGGCTGCCAGAACTCCTATATGGCCAATGGCGAGAAGAAGCTGGAGGCTTTTGCTGTGCCAGAGAAGGCCTTGGAGCAGACCCGGCTCACCCTGGGTATTAATGTCACCAGTATCGCGGTGCGGAATGCAAGCACAAGCACCAGTGTCCTCACAGCAGGCTCCCCTGTCACCTCCTTCCTAGCTGCCAGCCCTCATGAGGACAAAAGCTTTGACGAGACTTTAGACATGAGGTTCGACTGTTGAGCTCTACTAAGGTGATCCTCCCTTAAACCAGGTTTTACAGGGAGGTTGGGGAAGCAAGGGAGGAGTCACTACAATATTAAGGCAGCTATGGTTCTGTTCCAGTTCAGTTTAAAAGTAATTGCCAAAGCTCCTGCCTGTAAATCCCTTGTATCATGTGTTCTGTCTGACACACTGCTGCAGTTTTGATCGAGGAGAGTATTGTTACTGTAAGTGATCTACTACAAGTGATTTATACTTCACGATCTTTGGCAAGAGAAACTTGACCTCATTGTTGCGGGTCATGCTCTGTGCATAATCAAATAAAAGGTTCAGGTAAAGAGACATGTTCAAGAAATGGTACCTGCAATGTCAGTAGAGAATGGGttgtatttataatcttttgTATACAAATTTAAtgaattccatttaaaaaacaaaacaaaaaacattttaagatatattttataagttaCATTAACAACATTTGCAGTATTTATTGGATGTCATCTAACATAGAGTACTGTCTATTTAGGGCATCATCAGGATACCATTTCTACAGATGCAAGGTGGTGAAATGCAGTATGTACAGTTTGTCTAAATTATGTTACTGTCCTGTTTGTGTTAGTTTCTGCTgtctcaaatatttttttcaccttCGGggcattgaaaaacaaaattgtaacaTACCTGTAACATAGCATTTCCACAAAAATGAAAGTTAAAACAAGACTAtaaatgttgatttttattcttccccttctcccttctcccttcccctcccgaatgtaaaatatgtgttttatatagtCGAGCACACAGCCTTGGTAACCTCCCTCCACAATGTGCACAGTACTCCCCCAGCAGTTATGAAATGAGCATTGTCTTCAATGCTATAGTCTGCAGGCAAGGATTCAGTCTCTGCCACTCAAATAGATAGGTGGAAATCTGCTTTATCTGCACTTCATGTCGGCAGAGACTTGGATTTAAGCACTTAGTGTGATTAATACGCCAAATAACGATGGAACCTATTTGGTAAAACATAGCAATATTCCTTCACAACAGTAACTGTTCCCCCTAAGTGTGAGTTTACATGACATTCACATCTATGATCGGTTATGCAGGATGATATCTAGATATCTTCGTACATACAGCATTGCAAAATTTAAGGCCACCTCTCTTTTACATCTGTGTTGCATCTCATCCGTCAGACCAGGAACATGCAAAAGCATCAGGGTAATGTTTCTAGGAATTTCAGGGGGTGGGAGTTGTCAGCATTACTCATGTCCAAAAATAATCGGATTAATTTGTGCATgcagaattaaatgtttcatacaGCCAAGAATTCATGGCATACAGGCAACGGGCATTGCGACTGTGTGCATGCAAGTTTTCAGACATTTCTAGGTCCTTGCATTGgtctttgttttcagtgcaCAATGTGTAGTGAAAACAGCATTTTGTTCACCCCATCTACCCCGCCATTCCTCCATTAATATTGTCCCAGAAAGCATTGTTTTTGCAGCCTGACAATATAGAACCTATTTGATTTGGCACACAGCATGCACAATGACAGTTCTTCACCCAGTGTACAGAATAAAGAATGTGCAGGTATTCTCTGACAGATATGATGGCACCCTCTGTTTTGTAGTTTTACCTGGTGTCATTTCCTGTGAATGTGGTCAGGTAGTGTTTTTTGAAgccataggaaaaaaaaatgtgatttgtgtcccgtctgtatttcttttgtttttttgtttgtttgtttgttttgatttgcaagagttggagaaaaaacaaaacaaaaaaaactatttttgataATGAGTAAACGGTGGAAAATGCCATGtagttttcttgtgttttttttgtcaacTTACGCACA

Function

GO: NA

KEGG:

id description
K13164 MSL2; male-specific lethal 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67815 lncRNA upstream 169555 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 399190 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 399748 23663393 ~ 23664094 (+) True G54237
TU67740 lncRNA upstream 614365 23447154 ~ 23449477 (+) True G54194
TU67717 lncRNA upstream 828813 23234623 ~ 23235029 (+) True G54174
TU67901 lncRNA downstream 94060 24165790 ~ 24166061 (+) True G54328
TU67939 lncRNA downstream 206175 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 711780 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 1100271 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 1236530 25308260 ~ 25308495 (+) True G54563
AMCG00009064 mRNA upstream 13898 24029392 ~ 24049944 (+) True AMCG00009064
AMCG00009061 mRNA upstream 178018 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009059 mRNA upstream 222860 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009058 mRNA upstream 238755 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009056 mRNA upstream 401629 23658201 ~ 23662213 (+) True AMCG00009056
AMCG00009069 mRNA downstream 128627 24200357 ~ 24206521 (+) True AMCG00009069
AMCG00009070 mRNA downstream 140686 24212416 ~ 24216847 (+) True AMCG00009070
AMCG00009072 mRNA downstream 147074 24218804 ~ 24221967 (+) True AMCG00009072
AMCG00009079 mRNA downstream 390208 24461938 ~ 24498489 (+) True AMCG00009079
AMCG00009076 mRNA downstream 494709 24566439 ~ 24631632 (+) True AMCG00009076
TU67814 other upstream 87936 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 2769941 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2788488 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 2895267 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5509882 18550772 ~ 18553960 (+) True G53520
TU68049 other downstream 740888 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 843299 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1513162 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3541853 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4694724 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046503 True 2784 mRNA 0.48 2 NC_007135.7 26941197 ~ 26945390 (-)
grasscarp (Ctenopharyngodon idella) CI01000082_00439306_00442252.mRNA True 2532 mRNA 0.52 2 CI01000082 439159 ~ 442834 (-)