RNA id: AMCG00009068


Basic Information

Item Value
RNA id AMCG00009068
length 2082
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00009068
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24107205 ~ 24111579 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGCCACATATCGCATTATAGTGAGCACTGTTAATTGTTACAACAGTGTTGTGATAGACCGTCGTTTCCAGCACACTGTCCATTACTGTAACGGACCCTGTCAGGTCCTTAAACACGGAATTGAGTGTACAGTGGCCCATCGTAGCACCTGCTCAGAGCTGCTGGAAGCCCCTATCGCTTCCGATTCCTGTACCCGTCCTTCAAGTGCCCAGGATATTGGCAATACATTTTCAGCTGTTGAAAATAGCTGTGTTAACCCTGGAGCTACAAGTGAGGATTATCACCAAGTTCTTCCAGGTGCTCCCAGGGTCAAAAAGGGATTATCCATTCAGAGCTCCACCAGCCTTAAAGACATTACAGGAGAGGCTATCAATTTAGCCAGTGGAAAGATCAAGGAGTTCTCTTTTGAAAAGATAAAGTATTCTTCAAGTCATGTTACTTTCAGGAAAGGAAGGAAAGTACGACCAGAGTCCTTCAGCAGAAGGTCCACTGATCTGGATATCATATATGGGCACTTTGGGAATGATGAGAACTGCCCACCTTTCAGCCTGCTGCAGAAGTCGGTCATGGAGGAGCACAAGTTGAGCCGCAGTAGTTCACTGGAGCAAAATATCAACAATGTTGCAACACTGTACCTGAATAGCTTGACCGAGGAGAACCTGATTGCCAGGATCTTGGAAAAGACCAAAGCGGACAGTAATGCCTCGGGTGAGGACATCAAAGCCTGCCTGGACATCCTGCTCAAGTGCTCCGAAGACCTCAAAAAGTGCACTGACATTATCAAGCAGTGCATCAAACGGAAATCCATGGGGGGCGATAGTGACGATTCCACCACTAACCCTGAAATTATATACAGGAACGTCATGGCCAGACTTTCCAGCTACCTTAAGAAACTGCCTTTCGAGTTTGAGCATGGGCAGCCTGGCCGGGCAGAACACAGCGACCTGGCTGAATTGGTGAGCAGCTTGCATGGACTTCAGCAAAGTCCATTTTCTCCTATATTTGGGAACGAGCAGCCCCCCAGGTATGAAGATATAGTCCATTCCCCTCCTTTAACCAAAACTCTACCTCCTTCCTCTCTGTTGGAATCCCAGGAAGCCCCTCGGGACCCAGCAAACAATGTGAAATCAGTCCAAAGCCTTTCCAGCCTGCCATCTTCAACGGCGAACAACACCCAGCAGAATGCCACACCTGCTACTAATAGTTCCACTAGCCTACCTCAAGTCATTACAGTCAACCGCTCCGACAGCTATTCCTCTACAAACTCGTTACTGTCTAGCAGCAATGACAGCATATGCAAGGAATCTATGGAAGCATTGTATATAGAGGAGGATCCTGATATTGGCAAAGTGCTGGACAAGGAACTCAGAGGGGAAGGGAAATTCAGTCTGGGGTTCATGGAGGTAAGACAGTTCCCTAAAAAACCAAGCACTGTTGTAGAAAGCAGTACAGCTGGTGTTAAGAATGTGACTGCATTTAAGCCAAAGATGGAGCCTTATGTGTTGCAAGGAGCCAGCAAGACATACAACCCACCTAAGAATATGACTACAGAGCCCAGGACTTTCCAAGCATCAGGGCAGAGCAGCCATGAGGATGACATTGACAAATTGCTAATGGATTTGGAGTGCCTTTCCAAAAACATAGAGCAAGAGCCATCCGTGAAAGGCAGGAGCCAAGAGCCCAAGAACTGCAGCCAACAGTGCTTGACCTTTAGCTCAGGAACCAAAAGCCATCCTGCTCTGGAAGCCACCTCCTCACTCATGGTCAAGAAGGACACAAGCAGGCATGGTAGCAGCCCAAACGAGGAGGAGGATGGGGCCCTTCTGCTTCGTATCTTGGAAAGCATTGAGAGCTTTGCTCAGGAACTGGTGGAAAGTGGAACAGGCAGGGGAACACAGTCTAGAGAGCGGGAAGTGATGCGACTTCTCCAAGAGACGCTGGCGACCACAGCTAAATCCGAACAGGCATTACACCCAGCCTGCGTCCCTGCCGCTATGAGAGACCCTGGCTCCTCTCTGTTAATTCAGCAGACTCCAGAGGTCATCAGGCCTAACTCCAGTCTAATGAGAATGTTGTGA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0061061 muscle structure development biological_process
GO:0045333 cellular respiration biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67839 lncRNA downstream 260202 23838114 ~ 23847003 (-) False AMCG00009060
TU67824 lncRNA downstream 287415 23817062 ~ 23819790 (-) True G54273
TU67722 lncRNA downstream 804520 23302454 ~ 23302685 (-) True G54179
TU67711 lncRNA downstream 915710 23180327 ~ 23191495 (-) False G54168
TU67953 lncRNA upstream 166304 24277883 ~ 24278536 (-) True G54363
TU68013 lncRNA upstream 516260 24627839 ~ 24710773 (-) False G54408
TU68011 lncRNA upstream 534051 24645630 ~ 24658532 (-) True G54408
TU68014 lncRNA upstream 542035 24653614 ~ 24658532 (-) False G54408
TU68021 lncRNA upstream 552726 24664305 ~ 24666234 (-) True G54415
AMCG00009067 mRNA downstream 18264 24076399 ~ 24088941 (-) True AMCG00009067
AMCG00009065 mRNA downstream 44584 24051750 ~ 24062621 (-) True AMCG00009065
AMCG00009063 mRNA downstream 145353 23960599 ~ 23961852 (-) True AMCG00009063
AMCG00009062 mRNA downstream 192747 23894094 ~ 23914458 (-) True AMCG00009062
AMCG00009060 mRNA downstream 244170 23825229 ~ 23863035 (-) True AMCG00009060
AMCG00009071 mRNA upstream 123966 24235545 ~ 24242433 (-) True AMCG00009071
AMCG00009074 mRNA upstream 153918 24265497 ~ 24293628 (-) True AMCG00009074
AMCG00009073 mRNA upstream 201575 24313154 ~ 24317576 (-) True AMCG00009073
AMCG00009075 mRNA upstream 284375 24395954 ~ 24429749 (-) True AMCG00009075
AMCG00009082 mRNA upstream 671931 24783510 ~ 24787089 (-) True AMCG00009082
TU67499 other downstream 1923640 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 3843120 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 3843120 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 6238509 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 6360162 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 1041687 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 1062098 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 2681962 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 3502019 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 4946705 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile