RNA id: AMCG00009069


Basic Information

Item Value
RNA id AMCG00009069
length 2819
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00009069
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24200357 ~ 24206521 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGCTAATGGCATTATACAACCTCTGAAATCGACTTCCTCAGAATTGAATTTGTGGATGCGAATTTCTATATTATTCAGCAGGTTAAGCAGGCTAGTACAGATACTGCAGATATGAAGTCGGCTTTAGCGGTGGTGTTTCTGTTTTCCCTTCTGTCTGCATACTACGTTTACATTCCGCTGCCAAGCACGGTTTCAGAACCATGGAAACTCATGCTGTTGGATGCAACTTTCCGAGGGGTCCAGCATCTGGGGAACCTATTTCATGATCTGGGCCTGAGCCACCATATCCGGGTGCTGAACTTCGTGGTGCTGAACTTTGGGATGCTGGCTCCTGTGTCCAGCGAGGCGGTGCGGGTGAGCGACACCATGTTCAATGGGGTGCTGGTGAGAGTCTTCGAGTACAACAAGGAGCCGGGTGACGCACTGAAGAGGAGTGTGGTTTATCTCCACGGAGGAGGGTGGGCCCTGGGTAGTGCCAGGATAAGGTCATATGACCATCTATGTAGGAAAATGGCCGAAGACTTGAAGGCCGTAATTGTTTCCATTGAtTATCGACTGGCCCCAGATGTGCATTTTCCTGAGCAGTACAATGATGCATTCCTTGCAACCAAGCATTTTCTGCAGCCAGAGGTGTTGTCAAAATATTCTGTGGATCCGGCCAGGGTGTCAGTGTCTGGTGACAGTGCTGGAGGGAACTTGGCTGCCGCAGTGGCACAACAGCTTGCTCTGGACAGTAGTATTACCAATAAGTTCAAGCTCCAGTCCCTAATTTACCCAGTGCTGCAGGCTCTTGATTTCAACACGCCCTCCTACCAGCAGAACCGAGATGTGCCTATCCTGTACCGGCCACTCATGGCACGCTTTTGGCTGGAGTATCTGAATGGGGACCCCAGCTTCATCCAGCCCCTGTTGGTCAACAACCACACGGCCCTGGACCTCAGCCAAGCCACTGTGAGCCGAGCCAAGCTCAACTGGACCTTGCTGCTCCCTTCGGCCTTCAAGAAGAATTACAAGCCAGTGGTCCAGGCCATGGGCACGCCCAAGGTCATTGAAGAGGTGCCTGGCCTACTAGATGCAAGAGCTGCCCCACTGTTGGCCGACCAGGAAGTCTTAAGGATGCTGCCACGGACCTACATCCTTACCTGTGAACACGATGTCCTCCGAGATGATGGGATCATGTACGCCCGGCGCCTGGAGGAAGCCGGCATCCCCGTCACCCACGACCACTACGACGACGGCTTTCATGGCTGCATGATATTCGGGATCTGGCCCACCTATTTCTCTGTTGGTGTTCGGACCATGAACAACTACATCAAGTGGCTGGATGAGAATCTTTAGGTGTTCCtttgtgaatgtatgtgtgtatatttgtatgtgagtttgtgtgtaatAGATGAATAATTATGCCACTGCATATGtactttaaagaaaacacatgagaaaataatgcacttttataatgtCTAGTGCAATGCAACACGCCAATGCAAACCTAGCTTGACCTACAGCTGTATTTGGGCAAGAGTCTTGTCTTCCAAAGTCTTGTTTTAGCCGCAGTCGTCAGCATTCCTTTAAGAAATTGAAGCTGTTCTGTGTATCATGGCACTGAAACGTGTTACATTTGTCAAATGAGCTCATTGTTTTGCACTGCACTGGTTTAACCACAGGTGTTATAGTGAGTTCATATGGTACATATTATGAAGTATCGctttaatgtgcttttttaaaggAGTACATTCAAGTATGTTTATGAGAAGAGGAGTGATTAAAAATTACAACTTTAAGCTGTAGTATTTGGAccaagtgaagaaaaaaaattgatttataaaaattCTTCTtccaatattttgaaataaatatagcagtatttcaattttatttcatttattttttgtttaaaaagtatttgttcaAAATGGCAAAGATCACCTCAGAAGCAGTACACTTTATAGAAATACACTGAATTCACTGAACCCTTACCAAGAGTtaagtgtaaaaaaaactaaaaataaattaaaagaagtATCACTGAGACAGTGCAAGAGTTCATCACTTAAATGTAGtcatagctatatatatatatttgttttaaactcttGACTATACAGTGGCAATTTCTTTAGTATTTGAAGGGAACAGGTAGTGCAATGGAGATGCAATACCTGTAGGAGTTGTTACATTTAAGTCCTATTTACAGACTTACATTGTTAGGTGAAGCAAATTGTATGTAGGTAATTTAGCAGGTTTTAAGCAATATGCTTTCTGTCAGtatgctttttaatgtaattttaatttggtGTTTGGCctagctctttttttttttacaaactgcAGTTGCACTGCTCTAGTCTTTGGACTTACTGAGTACATACAGAACTGGATAATTTTAAGTGAATTTGAATGTGAACGAGATCCACAAGTCTCAACCCAATTCACTCTAAATACAATATAAGGCTTTTACTTCAACCTACctggtttatattttatttattctttttgttgtagtttttatgTTGGGTGAAACTTCTGAAATGCGTGGGCACAATCCAGAGTGGACAAATCCAATTGCTACGTCGTGTATCATTTACTCGCTTTGCAGTCTCTAAGCACACTTTACTTAGATTGTGGCTATGCCTACATCTTGtagattttattaattcagaCTTGTGAATGTATCTATATTGTATGTCAAGATGGAGaactaaaacaaatttaaattaacattatttctTTATAACATTTGGCTTCATTTTGTACATAGGGGGTTTTAACACTGTTGGAttgctttaacaaaatgttttgataTTGTCAACCGGA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14349 NCEH1, AADACL1; neutral cholesterol ester hydrolase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67901 lncRNA upstream 34296 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 306070 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 535705 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 536263 23663393 ~ 23664094 (+) True G54237
TU67740 lncRNA upstream 750880 23447154 ~ 23449477 (+) True G54194
TU67939 lncRNA downstream 71384 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 576989 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 965480 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 1101739 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 1140757 25347278 ~ 25348983 (+) True G54566
AMCG00009066 mRNA upstream 128627 24063842 ~ 24071730 (+) True AMCG00009066
AMCG00009064 mRNA upstream 150413 24029392 ~ 24049944 (+) True AMCG00009064
AMCG00009061 mRNA upstream 314533 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009059 mRNA upstream 359375 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009058 mRNA upstream 375270 23816825 ~ 23825087 (+) True AMCG00009058
AMCG00009070 mRNA downstream 5895 24212416 ~ 24216847 (+) True AMCG00009070
AMCG00009072 mRNA downstream 12283 24218804 ~ 24221967 (+) True AMCG00009072
AMCG00009079 mRNA downstream 255417 24461938 ~ 24498489 (+) True AMCG00009079
AMCG00009076 mRNA downstream 359918 24566439 ~ 24631632 (+) True AMCG00009076
AMCG00009078 mRNA downstream 427869 24634390 ~ 24647480 (+) True AMCG00009078
TU67814 other upstream 224451 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 2906456 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2925003 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3031782 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5646397 18550772 ~ 18553960 (+) True G53520
TU68049 other downstream 606097 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 708508 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1378371 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3407062 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4559933 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile