RNA id: AMCG00009070


Basic Information

Item Value
RNA id AMCG00009070
length 2935
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00009070
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24212416 ~ 24216847 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCATAACATGAAATCTCAGCCTCTCAGTGAAATGCGCCAGTTATATTCGACTAGTAGTGTTAGCAGAAAATAAAGCAACGAGGAAAcgaaacttaaaacaaataaatacataatttatggTAAAGCAGGGCGAAGGTTTCCCGGTTCGCGGAGCTCCGCCTCTCGTTTGTTTATAGCGCTGTGGTGCTTTCTCGCATTAAGCTTTGGTCTGGGACGTTTGCGTGCAGCGGGCAAAATGACCAACTCGTCTTCGATGCAGACTCTGGGACTTGTGCTTCTCTTTGCAGTTCTCCTGCAAACGATAGCAGTGGCGGTCACTTTTATTTACTTCACCAACTCGCTATCAACGatgaaggaaacattttctaaaagcaGTATTTCCTGCCTGATGCGGTCTAATCTGAAGACTCTTCAGGGTGTGACTGCAGAGGAAGGCAATGATGACCCCTGCTGGCAAGTGACACAACAGCTCCATCTCCTGATAGAAAAGACCATGTCAAACCGCTACCAGAAGGAAATATATTCAGCTGTGAAAGGTGAAGTGTCTCAGGTTTTGCCATCCCTGACGATAACGAATCACGACTCGCCACGTCCTGAAATTGCAGCTCATCTGACGGGGAATTTCAGGGGTAATACGGATATAATGGAAAATCCAATAAAAAAGACAGTTCATGGTCAGAAGATTCAGTCCTGGGAGTCTGAGAAGGGCCTGGCATTTGTGCATAATCTTCAACTGAGTAACGGTGAGCTCGTCATCCCCCGAGCGGGACTGTACTACATCTACTCCCAGACATACTTCAGACATACCTTAACCTCGGAGGATTCTGAAGTAGCAGATGCATCAATAAGGAACAAACAGATGCTGCAGTACATCTACAAGAAGGTGGCCTCTTATCCTGAGCCAATCCTTTTGATGAAAAATGCAAGGACAACTTGCTGGTCTAAAGACGCAGAGTACGGACTGTATTCCATCTACCAGGCTGGCGTGTTCCTGCTCAATGCCAATGATAGAATATTTGTGTCGGTCAGCAACATCAGCATCATTGACATGGATGAGGAGTCCAGTTTCTTTGGTGTGTTTCTGGTCAGCTAGTGAAAGGTGGTGATATGTTTTTTATGAACTACCTTTTACCATACCCCAGGCACAGAGGGTGTGTTGAAGCAGAAGGTGTGCGTGGAAGACTGTCCACCCAAAAGCTTTTTACTCTGGTGTGAACATCGTCATGTCCAAGGAAGAAAGGAGATGGGAAGAGGGATGTCTGCTGCTCCATGGCCATATTAGATGGGCTTCTGGGCTGGTCTTATGCAAATACTACCTCATGTGTGACTGATAAAAGATGCAACCAGAAGATCTAGAAGTGGATCAGGGGTAAGGAAGGGACCCAAGTTGGTCAGCTGTGTGTTACGGTGCTGTGCCGTATCCGTCAGTGGTAAAGGACTGTGGCTGAAGTGCAAGAAATGGGGGCTTGGATTGTCCCGACTAGTGCAATCTTGAGTGGAGTTCAGGCTGTTACAAAGATACTATGAATGTGTTCAAGTGATAGGGGAAAAAGtgccattattttattgtgctcAGTAATCACCACTACTAAACATCAAACTGTACACAGTCATGGCTTAGATCCATCTTTACAACTGTAGCATTACAAAGCCCTGGGATTTCAATGGGCTTGTAAGAAGAAGAATGACAAAACTTCCCAAATGATGTCAGTGAATTATATAAAGCACTAAACTGCACCAAGGGAATGTAGATAACAACAGGATCATGTTATCAAGTTGTCAAGTCTTGTACCATATTATTAATCTTTTGTACATCTGAGTATATCTTGATTTACTTATGTTCCTTCCAACCTATGGATTAAATAGAGATTACACTGGAAAGAATAAAAAGTCTCAATGGACAAAAGAAGCAAGATGGAACTTTGATGAGAATGTTGTAAAGATATAACAAAAAATTATTGATCCAAGTTCAAACATGAATACAGGATGTCATACTCattaatacagtaaaacatgCAATATGTAGCTTTTTCTCCATGTAAATAttccaaaacatatttatttgtcaataaatccacaatacattattgtaaacaGCATCACTAGAAGTTCTTATCATGTTTAAAGTGAGTGAAAGGAATAATTTACATGCTGTAATTCTTTCCACAAAGacagtacatttttgtttaaactgaattgcatttattataattataacttgtcagatttaatttaaattagtaaaaagACTAACTTGTATACATAGCTTTGAGATCACTAAATTGTATGGGTTAAAATCTCATCACTACTGAAAAAGTGCACAATACACATTgaatagatatttaaaaatctcCTCAGATAGCACATTGTATTGAAATCtatttgctttttgcttttttcaaacTAAATATGTATGCACAGTAAGCACAAAGCCTTAGGAAGAAATCAACATGCTCATCAAATatacaacagaaacaatatgATTTCTAAAATAATGAGATAATAAAGCAATGCAAAAATGATTACTAACCATTTGTTGTGATTGTTTAAGTATCCCTTTTTAAGTCTGGAATGATTGTACACAGATTAccctggtgttttgtttttatatgtagtgTTCTTTTGTATAATCTGAGGATTTCAATGAAGCAGTCAACCTACAAAGCAGGTATGCCCTtgcttttttgtaataaaaggACATCACCTACATAAAAGCATTATAAGTGAATATCTGGCCACTGCTGTAACAGAATCTGATTAAATTCTCCCACTCATTTGTCCTCCAAAACAAGGGTAGTAAATTTActttcaaatcaaatctttgtTCTCAACTAGCCTAGTATATCATATAAATCCAAGTATACTGCTCATGTTTacaaggtttatttatttcttattggTTCTTTTTATTAGTCATATGGGGTGGTGGCGG

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
K04721 TNFSF10, TRAIL, CD253; tumor necrosis factor ligand superfamily member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67901 lncRNA upstream 46355 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 318129 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 547764 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 548322 23663393 ~ 23664094 (+) True G54237
TU67740 lncRNA upstream 762939 23447154 ~ 23449477 (+) True G54194
TU67939 lncRNA downstream 61058 24277905 ~ 24278561 (+) True G54356
TU68038 lncRNA downstream 566663 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 955154 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 1091413 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 1130431 25347278 ~ 25348983 (+) True G54566
AMCG00009069 mRNA upstream 5895 24200357 ~ 24206521 (+) True AMCG00009069
AMCG00009066 mRNA upstream 140686 24063842 ~ 24071730 (+) True AMCG00009066
AMCG00009064 mRNA upstream 162472 24029392 ~ 24049944 (+) True AMCG00009064
AMCG00009061 mRNA upstream 326592 23872708 ~ 23885824 (+) True AMCG00009061
AMCG00009059 mRNA upstream 371434 23825222 ~ 23840982 (+) True AMCG00009059
AMCG00009072 mRNA downstream 1957 24218804 ~ 24221967 (+) True AMCG00009072
AMCG00009079 mRNA downstream 245091 24461938 ~ 24498489 (+) True AMCG00009079
AMCG00009076 mRNA downstream 349592 24566439 ~ 24631632 (+) True AMCG00009076
AMCG00009078 mRNA downstream 417543 24634390 ~ 24647480 (+) True AMCG00009078
AMCG00009077 mRNA downstream 432867 24649714 ~ 24654285 (+) True AMCG00009077
TU67814 other upstream 236510 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 2918515 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 2937062 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3043841 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 5658456 18550772 ~ 18553960 (+) True G53520
TU68049 other downstream 595771 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 698182 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 1368045 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 3396736 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4549607 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile