RNA id: AMCG00009077


Basic Information

Item Value
RNA id AMCG00009077
length 1165
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00009077
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24649714 ~ 24654285 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCCCCTTGCAAGGCTGCCGCAGTAAAATTGGGCGCGCCTGCGCAGTCACGCTCCCTTTTTGTTGGAAGTACCCCTAGAATCAATCCACCATGGCAGACCCTGATATTGATTTCACCAGTGGAGATGCTGGGGCTTCCACCACCATCCCCATGCAATGCAGTGCTCTGCGCAAGAACGGGTTTGTGGTGCTGAAAGGACGTCCATGCAAGATTGTTGAAATGTCAACTTCCAAGACTGGCAAGCACGGCCACGCCAAGGTTCACATGATTGGGATTGACATTTTCACTGGTAAGAAGTATGAAGATATCTGCCCTTCCACCCACAACATGGATGTCCCTAACATCAAGAGAAATGACTTCCAGCTGATTGGCATTACAGATGGTTTCCTTTCCCTGCTGATGGACAATGGGGAAGTCCGTGAGGATCtcagactgccagatggtgatcTGGGCAAAGAAATTGAAAGCAAATATGAAGCTGGTGAAGAGATGCTGATCTCAGTGCTTTCAGCCATGGGAGAGGAGTCTGCAGTTGCCATCAAGCCCATGACCAAGTAAATAGGAAGAGACTGGCTGCTCAGGCTGAGACCTACCACAAATCTTAAATTTTGGTTCTAATTGTCACCAAAGCTATGGCCTTCACAAACAACCtcaatttcttttttcttttttttttttttttcccaaaaccGTGCTGGACTTTTACAACTGTCTTGTAGGCTGATTGGCATTCTGCCAAATCactgaggttttgttttttgcctttttaattgagTTCTTGCCTTCAAGATGTCAGTCTTACCACTTACATtcctaaatgtttaaattgatgGGATCCAATTTTGAAAcctaaacagtatttttttttattatttggtgttcatccctccccaccccccaggaGATATGCATtttggtttatatattttattttaactgacaaGGTgcccagatttatttttcttcccctgGAGGCCATATGGTAATCAACATATTGAGTGTTGATGCCACCTCCTGTTGGTGCAGAGATGTTAATGCCCTGGAACTGATGCAGCTGGAATTGCTGATTATCGGTAGTTAGCACTTAAGAGCAGGCCTTGGGTACAACCAAACATTTTTACACCCTAGAAAACAAActtcagtgattttttttttgttttgtt

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006452 translational frameshifting biological_process
GO:0045901 positive regulation of translational elongation biological_process
GO:0045905 positive regulation of translational termination biological_process
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine biological_process
GO:0043022 ribosome binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03263 EIF5A; translation initiation factor 5A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67939 lncRNA upstream 371153 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 483653 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 755427 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 985062 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 985620 23663393 ~ 23664094 (+) True G54237
TU68038 lncRNA downstream 129225 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 517716 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 653975 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 692993 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 750385 25404670 ~ 25413822 (+) True G54580
AMCG00009078 mRNA upstream 2234 24634390 ~ 24647480 (+) True AMCG00009078
AMCG00009076 mRNA upstream 18082 24566439 ~ 24631632 (+) True AMCG00009076
AMCG00009079 mRNA upstream 151225 24461938 ~ 24498489 (+) True AMCG00009079
AMCG00009072 mRNA upstream 427747 24218804 ~ 24221967 (+) True AMCG00009072
AMCG00009070 mRNA upstream 432867 24212416 ~ 24216847 (+) True AMCG00009070
AMCG00009080 mRNA downstream 10018 24664303 ~ 24666228 (+) True AMCG00009080
AMCG00009081 mRNA downstream 107731 24762016 ~ 24780751 (+) True AMCG00009081
AMCG00009085 mRNA downstream 158894 24813179 ~ 24816522 (+) False AMCG00009085
AMCG00009084 mRNA downstream 163933 24818218 ~ 24844217 (+) True AMCG00009084
AMCG00009087 mRNA downstream 203728 24858013 ~ 24859230 (+) True AMCG00009087
TU67814 other upstream 673808 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3355813 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3374360 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3481139 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 6095754 18550772 ~ 18553960 (+) True G53520
TU68049 other downstream 158333 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 260744 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 930607 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2959298 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4112169 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046489 False 969 mRNA 0.46 5 NC_007135.7 26482322 ~ 26485345 (-)
grasscarp (Ctenopharyngodon idella) CI01000082_00226881_00228115.mRNA True 2344 mRNA 0.44 4 CI01000082 226256 ~ 229366 (-)