RNA id: AMCG00009078


Basic Information

Item Value
RNA id AMCG00009078
length 3118
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00009078
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24634390 ~ 24647480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGGATACATAGAATGTCCTTCTGGACCATTGGCAAACTGCTGGATAAGCAACATGCTGCCGGTGCGTGAACACATGGATTGATTATTAAAAACTGTGAGTGACTGGGTGAACATTGGAACACTGGTGTCTTTCTACTATGGAGAGAGGACTGTTCTGTTGGAGAAATGGAATCTGATAAGCAAATCACAGGCACCTTGCTTCTTGCTGTCTTCACTGCAACTCTCGGGTCCCTGCAGTATGGCTACAGCATCGGAGTCATCAATGCGCCGCAAAAGGTCATAGAAAGGCATTATGAACGGACTCTGGGTTTGCTGCATAATGACTCCCTGGCTGTCAATGGCAGTGACGTGATGGTGTCACATTCCTCTGTCTTGATGTACTGGTCTTTATCAGTCTCAATCTTCTCCATTGGAGGAGTGTTCTCCTCCTTCCTGGTGGGGTGGGTTGGAGAAAAGCGAGGGAGAGTAAAGGGCATGCTAGCTGTGAATATCCTAGCTGTGACTGCAGGTCTTCTGATGGGACTGTCCAAAATGGGACCGGCGCATATCATGGTCATTGCAGGAAGAGCATTGATGGGGTTTTACTGTGGACTATCGTCTGGGCTTGTTCCGATGTACATTGGAGAGATCGCGCCCACAGCATATCGAGGAGCCTTTGGGACCTTACACCAGCTGGCTATTGTCACCGGAATATTGCTGAGCCAGGTCATTGGTCTAGAATTCCTGCTGGGAAATGATACAATGTGGCCACTATTACTGGGCTTGTCAGGAGCACCAGCTGTTCTCCAGAGTTTTCTGCTGCCCCTTTGCCCAGAGAGCCCCCGCTATCTCTACATCAATCTGGGCAAGAAAGAGGAGACTCAAAATTGTCTGAAGCGGTTAAGAGGAAAATGTGACATTGAAAAAGATATGGCTGagatgaaaaaggaaaagcaagatTCTATAAAGGAGGACAAGATATCCATCCTGAAGCTCCTTCGCTCTACTGATTATCGACAACCCCTCTTTGTGGCTCTCATGATGCATCTCTCTCAGCAGTTCTCTGGCATCAATGCAATTTTTTACTACTCCACTAGTATTTTTGAAACCGCTGGCTTCACCCAACCCGTTTATGCTACAATCGGAGTAGGGGTCATCAACACCATTTTCACCATGCTTTCAgtggtGCTGGTCGACAAAGCTGGTAGACGCACCCTATGTTTGATAGGATTAGCAGGAATGTGCGTCTGTGCAATAATCATGACTGTTGGACTGGTGTACTTGGACCAGTTTGCTTGGATGAGCTATGTCAGCATGGCAGGCATCTTcttgtttgtatgtttctttGAGATTGGCCCTGGCCCTATCCCATGGTTCTTTGTGGCAGAGCTCTTCAGCCAGGGCCCTCGACCATCTGCCATTGCTTTAGCTGGCTGCTGCAACTGGACCAGCAACTTCCTCATTGGGATGTGTTTTCCATATATACAGGGTTTTTGTGGAAGTTACGTCTTCATCATCTTCGCTGTCCTGCTGTTCTTCTTCACCATGTTTGCCTACTTCCGAGTGCCTGAAACAAAGGGAAAGACTTTTGAGGAAATCTCAGCAGAATTCTATCGCCGACGTCATGGCACACTCCCCAGCCCTAAAGCTGCAACTGAGATGTTATATCTGGGGACATCGACAGATGCCTGAGAGTCTCCGAACAAGAGAACGCAAGAGCTGCCATTTTGGAAGTTATATACCtgtcccattttttttttttatatatatccaccctgaagaaaaaaaaaaaaaaaaaactaattttgagAGATGTCTGTTACACTACAGGACTTTCAGTATTTTGAACACTACGGAAACacataaaatgcaaacacaaaattTAATGGCATTTCTGTGCTAAAAACATTCCGTTCTGTGACTATTGAATTAAACTAATACTATGCAATGGCTTTGATATCAACCACATTGTAAAGAGAAACTCTGGGCTGAGCTCAATTGctctgttttaaatatatgtatattgacaTTTCTTAAGATCTAAGTGCTTTTCCAGGAGTTACTTTCTTTGCATGCATATAAAACATTCAATCAGACATTGCGCCCTTGAcatccaaacacaaacacagctgtcaCTGGCTGTAAAGTTCAGTAATAGGCTGGGTtgtgagtgtatatgagatTTTGTTCTCGTTTGACTGATCTGGTTATAGAAACAGAATCTGTCTATTGTTCAGGGAGTCAAATAGAGATCAAAGTATAGAGAAGTTTCTGGGACATATAGGAAATGGAACATGAATGGACTTATCTCTGGTTTCTTAGGCacttttatttctaatatatgaataaatagagTCAAAGTAATTGGGAAAGGAAAAGACTGTTAACAATGTAACAGCTGCTGTTGCAATTTTATGAAACACTGTCCttgcatattttcaaatgagGCAGCACTTCTTTCCTTTTTGTgaacactgtttaaaaaaagtgatCTAATGCCAGCTACATTTTTAGTTTCCATGTAGTTTGCAAGATTAACTTTGATTTGTTATACCTTGTTTGTATGGTGAATTGTGTTGTTTGTCATTGAGAGTATGCATGAAAGCATAACATTACTGTATGTTAAATCCAACAGCTTTTGCTACATGAATTACTGATAAGAAAAATGTCCTATAGGAACGTCATGCAGAAATCTTTTGCAAACTCCTTCTAAACTATTTAAAGGATCCTATAAAACTACTTGCAGTGCTTATGACTGGATGTTATACAGCTGAGACTAAATGGGAGAGAAATAGAATCTGCCTTCCACACACCTTTGAGATTTGACTGCATTATTCAACTGTTCTTCAGCAGCTAACTAGAAGACCTTTATACAGATATCTGTTAATTTTTAACTTCtatgaaacacaaacatgtttgttaAAAGCAAACCCTAATTCCCTTTCTAAAAGCTCGACAGATTGTAATTTATGTTAATGGAGCATGATAAttgaattttacatttcactttgtCGTGTTTTACTCTACCTCTGCTAAGTTactatattattacatttcacaattgTGATTTGATGACTCAGTGGAAACTCTGAAGATAAATGATACCTTGTGAAAACAACACTTGCCTGAGCTTGGCG

Function

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0055056 D-glucose transmembrane transporter activity molecular_function

KEGG:

id description
K07593 SLC2A2, GLUT2; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67939 lncRNA upstream 355829 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 468329 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 740103 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 969738 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 970296 23663393 ~ 23664094 (+) True G54237
TU68038 lncRNA downstream 136030 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 524521 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 660780 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 699798 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 757190 25404670 ~ 25413822 (+) True G54580
AMCG00009076 mRNA upstream 2758 24566439 ~ 24631632 (+) True AMCG00009076
AMCG00009079 mRNA upstream 135901 24461938 ~ 24498489 (+) True AMCG00009079
AMCG00009072 mRNA upstream 412423 24218804 ~ 24221967 (+) True AMCG00009072
AMCG00009070 mRNA upstream 417543 24212416 ~ 24216847 (+) True AMCG00009070
AMCG00009069 mRNA upstream 427869 24200357 ~ 24206521 (+) True AMCG00009069
AMCG00009077 mRNA downstream 2234 24649714 ~ 24654285 (+) True AMCG00009077
AMCG00009080 mRNA downstream 16823 24664303 ~ 24666228 (+) True AMCG00009080
AMCG00009081 mRNA downstream 114536 24762016 ~ 24780751 (+) True AMCG00009081
AMCG00009085 mRNA downstream 165699 24813179 ~ 24816522 (+) False AMCG00009085
AMCG00009084 mRNA downstream 170738 24818218 ~ 24844217 (+) True AMCG00009084
TU67814 other upstream 658484 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3340489 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3359036 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3465815 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 6080430 18550772 ~ 18553960 (+) True G53520
TU68049 other downstream 165138 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 267549 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 937412 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2966103 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4118974 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile