RNA id: AMCG00009085



Basic Information


Item Value
RNA id AMCG00009085
length 659
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00009085
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24812618 ~ 24816534 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCGCACTCCAGGGCTGTGAAGCAGACGAGGACTGCGGATGATCCGAAACCGCAGACGGGTCCCAGAAACAGAGCATTTGCCAGTACGAGAGGTAACCATAGCAACGTGCGAGCTGGAAGTTCCATTTGCGGGAGCGGGAGAAACGCAAAGACAAGCGCAAAGACCGCTCACGCCAACGCCAAAGCAAAACCAGAAGGGGCAACGACAACTTTTACAGTCATCCCTCCCAACCCAAAGAAGAGGAATGAGCTAAAGAaaaAAGCAGAAGCCGAACTGGCAGCACTGGAGGACTTCAGACGGAGGCAGTTAGTGGGCCATGTATCCATTGTCCCTAGCACTGTAGgtgAGAAGAAGTATACCTTGAATTCTACCAGTCACTGGGTGCTGAATGATACATTTCAGGTGTGATTTGATTGTAAATTAAGGGCTGAATGTGCAACAGCGTTCATTTctattatattgtattcatcATATTCTTCACAGAAGGGACTACATAATTAATCTTAACCCTTTAATTGAAGTTTCTATACTGGAGTATTTGTGTTGCATGTTGTACAAATTcaagttaattaataaacataaacataagtCAGTTTTAATATACAGGTATACTGTTTTTTAAGTCTGAAGTGTTACTGCACTTTTCTGTACccctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68038 lncRNA upstream 26094 24783510 ~ 24787085 (+) True G54430
TU67939 lncRNA upstream 534618 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 647118 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 918892 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 1148527 23664157 ~ 23664652 (+) True G54238
TU68188 lncRNA downstream 355479 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 491738 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 530756 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 588148 25404670 ~ 25413822 (+) True G54580
TU68253 lncRNA downstream 673352 25489874 ~ 25493573 (+) True AMCG00009104
AMCG00009081 mRNA upstream 32428 24762016 ~ 24780751 (+) True AMCG00009081
AMCG00009080 mRNA upstream 146951 24664303 ~ 24666228 (+) True AMCG00009080
AMCG00009077 mRNA upstream 158894 24649714 ~ 24654285 (+) True AMCG00009077
AMCG00009078 mRNA upstream 165699 24634390 ~ 24647480 (+) True AMCG00009078
AMCG00009076 mRNA upstream 181547 24566439 ~ 24631632 (+) True AMCG00009076
AMCG00009084 mRNA downstream 1696 24818218 ~ 24844217 (+) True AMCG00009084
AMCG00009087 mRNA downstream 41491 24858013 ~ 24859230 (+) True AMCG00009087
AMCG00009083 mRNA downstream 57051 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009088 mRNA downstream 81594 24898116 ~ 24917710 (+) True AMCG00009088
AMCG00009089 mRNA downstream 134253 24950775 ~ 24958636 (+) True AMCG00009089
TU67814 other upstream 837273 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3519278 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3537825 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3644604 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 6259219 18550772 ~ 18553960 (+) True G53520
TU68059 other downstream 98507 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 768370 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2797061 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3949932 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 4112370 28928892 ~ 29011768 (+) True AMCG00009207

Expression Profile