RNA id: AMCG00009087



Basic Information


Item Value
RNA id AMCG00009087
length 1218
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00009087
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24858013 ~ 24859230 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCAGCACTCAGACAGGTCTGAAACCCCCTTTTAAAGAGGTGGCTTTACTCAAAGGAAACGTGAAGAGGCTGTGTAGGGAGAGGCTGGAGGACGCCCCTATTAAAAAAAGGGTAGTGGCTGAAATTAACCTGAAGCGGAGATCGCTCGAGGGAGTCCCCAAATCGCCCAAAGTCAAGAAGGAATACATAGAGGACTGCGGGGAAGGGGAGTCCAGCGAGGGTGAGAGAATCGGGAACCAGCTGCCTGTCCCCGGGGCCAAGGCTTTAGACCTCAGCCCAGGACTCAAGCACACTCTGGCCCAGTTCCACCTCAGCAGCCAGAGCTCCCTGGGTGGGCCCGCAGCGTTTTCAGCCCGAAACACCCAGGAGTCCTCCTCGCCAAACGTCTTTGTACCTCTTCCCTCCCCACCTGTGCTGCCGGGTCCTCTGCTCATCCCCTGCGACAGCTCCACAGAGCTCACCCACTCTCTTTTGGAGGGGGAGTCCATCTCTTGCTTCATGGTCGGTGGGGAGAAGCGGCTGTGTCTCCCCCAGGTCCTCAATTCAGTGCTGCGTGACTTCTCTCTGCAGCAGATCAACACAGTCTGTGACGAGCTCTACATCTACTGCTCCCGCTGCAATGCCGACCAGCTGCACATCCTCAAAGTGCTGGGCATCCTACCCTTCAATGCCCCCTCCTGCGGTCTGATTACCCTCACCGACGCCCAAAGACTATGCAATGCCCTGTTGCGCCCGGGCACTCTCCCCCAGGGCACCCCCTGCAAGCTGTCGGAAAAGGCCCAGCTCAAGGAGAGCGAAGCTGTCTTTGAGGTGGAACACGAGTGCTTGGGGAAGTGCCAGGGTCTTTTTGTACCCCACTTCTACACACAACCCGATGCCCCCTGCATCCAGTGTGGGGAGTGCCAGCTTATGTTCTCCCCCCAGAAATTCGTCATGCACTCCCACAAGTCCCCCGATAAGAGGACCTGCCATTGGGGCTTTGACTCTGCCAAGTGGCCCTGCTACCTGCAGCTGGGTCGGAAGTACTTTGAGAAGCCTGAGGAGATCGGGCTCAAGAGGCTCCTAGAGGAGATGAAGGAGAAGTTCCACTTCCAGCAGAAAAGGCCACTGGAAAAAGTAAGTAGCACTCACCTGTACCCTGCTGTTGGTGTATTGGCTCTTTTGGATTTGTTGGTCTGTTCTGCTGACCCACTGGTATATCTCGCCCTGTTGTGA

Function


GO: NA

KEGG:

id description
K18499 SKIL; Ski-like protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68038 lncRNA upstream 70928 24783510 ~ 24787085 (+) True G54430
TU67939 lncRNA upstream 579452 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 691952 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 963726 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 1193361 23664157 ~ 23664652 (+) True G54238
TU68188 lncRNA downstream 312771 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 449030 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 488048 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 545440 25404670 ~ 25413822 (+) True G54580
TU68253 lncRNA downstream 630644 25489874 ~ 25493573 (+) True AMCG00009104
AMCG00009084 mRNA upstream 13796 24818218 ~ 24844217 (+) True AMCG00009084
AMCG00009085 mRNA upstream 41491 24813179 ~ 24816522 (+) False AMCG00009085
AMCG00009081 mRNA upstream 77262 24762016 ~ 24780751 (+) True AMCG00009081
AMCG00009080 mRNA upstream 191785 24664303 ~ 24666228 (+) True AMCG00009080
AMCG00009077 mRNA upstream 203728 24649714 ~ 24654285 (+) True AMCG00009077
AMCG00009083 mRNA downstream 14343 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009088 mRNA downstream 38886 24898116 ~ 24917710 (+) True AMCG00009088
AMCG00009089 mRNA downstream 91545 24950775 ~ 24958636 (+) True AMCG00009089
AMCG00009097 mRNA downstream 172872 25032102 ~ 25037678 (+) True AMCG00009097
AMCG00009096 mRNA downstream 292568 25151798 ~ 25157551 (+) True AMCG00009096
TU68049 other upstream 41479 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 882107 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3564112 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3582659 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3689438 21168231 ~ 21168575 (+) True G53911
TU68059 other downstream 55799 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 725662 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2754353 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3907224 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 4069662 28928892 ~ 29011768 (+) True AMCG00009207

Expression Profile