RNA id: AMCG00009089


Basic Information

Item Value
RNA id AMCG00009089
length 2608
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00009089
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24950775 ~ 24958636 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGATCGAAGTCAATAAATAcggtaaaattaaaaacttttccAGGTCGTGCCTCATTAAAGTGCATTTTACCAAAAACAACTTTCATGAAATTGATTCTATAGATTGATTGGGACCTCAGATCCTATTTGCACTGGGCAGAAACAGGATCTTGCTCTGCTGCACCTATGAAAACAAGCTCCTGCAGGATAATACTGAACTATCCCATATCACCTTCTGCTCAGAGGTACAATTCCCACACTGTAAATGGAGACCCAAGAGTTCCAGAAGCGAGGGGAGGGCACCCAGAGGAGATCTCCCTTTGACCTGATCATGAATCAAATCCGCAGGAAGAAATCTTTGACTGAGCGTCGCCAGCGGCCCTCCGTGACCCGATTTTTTAGACCCTCTGAAGACTcagaaaaaagggggaaaagcaGTTCGCAGACCAAAGAGAGTGAGAATGACGACACTTCCCGGGCTGACGGCAAGGAGAACCTGGAACCAGTGTGCAGCGACTCTGCCGGTGGAGAGGTGTGCTCCGTGGTGGGCTGGGGGCGGGTGAAGATGTTCGCGCAGAAACTTGGGAAGAAGCCCGACAGCCGGAGTCTTAGCCTCAACCACTGCGATCTCACAGCCACTGATGTGGTGGAACTGGCAACAATGTTACCCTTCTTGACACTCTTGGAGGAATTGGACCTCTCTTGGAACGATTTAATTGGTGGAGCACTGAAGGCTTTGACCTTTCACCTTCAGCACATAAATAAACTCAAGACCCTGAAGCTCAGCAGCTGTAGACTGACTGCAGAGGACCTCACCGCTTTAGGTGAGCGACTGTGTCTGTTGCCCTGCCTGGAGGTGCTGGACTTGTCTGCCAATAAACTAGTGGCAGGGGGCTTGGAGGACCTAACCCAAGAGCTGAAAAACAACTGTCGTCTCCGTGTCCTCAGGATGCAGATGTGTGGACTGCAACAGGACAGCATTTGTACTCTGGGCAATGCTTTTCCGTTCCTCTCGGCTCTTCAGCAGCTGGACCTATCTTGTAACAAGGAAGCTGGAGGGGGATTTAAACAGGCAGCTGCTCAGATAGGCCACCTGAGTCGCATGCAAAATCTGGATTTACACCTGTGCTGCTTGACAGAGGAGGACATGGAGGGACTCAACCAGGTAGCTCCGTCCCTTTGTGACCTCACGATGCTGGATTTATCGTCCAATAAGAAGATTGGGCGTATGTGTCAGCAACTGTTTCCCAGTCTCCCACTGTGTAAGATGAAACGCATTGTGCTGAATAACTGCAATCTAACCAAGGCCTCCTACCAATCACTAGGAGATTTGATGCTGCAGCTGAGTGAACTGGAGACCCTCAACTTGTCCTGGAATAAGTGTGTAGGAGGAAGCCTCAAGCTACTGTTGGACCCTCTGCAGCCCAACCCCAGACTGCAAGAACTGAAGCTGAGTAGCTGTAACCTGACCACAGAAGACATGGTGCACTTGGcatCTGTTTCAAAGTCTGGGAAACTGGCTAGCCTGAGACTTCTAGACCTGACGTACAATGACACAGTGGGGGACCAGGGCTGGGCTTTGTTTTTCcaggaggtgggggggctgcAGGGGCTGGGGGAGCTGGATATCAGCCTGCGGCCCTCATCTCGACGGGATCCCTCTCCCTGGCTGGACAGTCTGCTGAGTGCCCTGCACCACCTGCCTGCCCTCACTGACTTTGCTATGCAGCGCTGGCTCCTGAGCTTGCAGGACACAGAGCGCCTGGATGCCTTCAACAAAGAGAGCAAGAGGAATGTGCGCTTCGACTACTGCTTCTCCACTCCAAAGCCAGACGGGGAGGAACCAGTGGAGCAGTGGGGTggatcaaaaataattaaaaagagagaaacttGACTGCTTACATAGAAAATACTGATTCCTGGAGTTTTCAACCCCATTCTCACTGTGGAAATAAACTTTTACCATGTTACTgaacattcaatatattttcaataactAACTTTTTGGTGGCATAATATAGACCCTGAATGCAtgatttcatatacattttatatacagtatgatGGGATTGTTTTCCACATTAATTACTCATGATTAAGACTTCAACAAGGTTTTTATGCTGGTCTTTCATTGTGCCAATAGGGAAATTAGTAAGCACAATATTTGATCCAAAAATTTCGCAAGACtgatcttttaattttttaaatgttggtcttttatattttaaaagcttgtatatttttatagtgATTGTTTGAAAAGTCAATTTATGACACTATGATTATAATCatgacaaaaaaactaattttaactAATAATTCTCCACACGCTGACTTTAAGTTATGTACACAGAGATGATTGtaattaaatagatttaataGATCAAAAAGTGTTgatgtaaaatcattgtttcTTGTGGATTATGAAATAATTCAACTTCAGgatacattaatttacatttttaatgatacttgatacagaaaaagaaaaagaaaaaacaaaaaatttgTCAGTTGTGAGCAGCATGTGACCGTAGGACCGTTATTACATTCAGACAGTTTCCCCagtcaaaacatttgaaatgtgttcaaCATCTCATAtctgtctgctaagaaataaataataa

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68038 lncRNA upstream 163690 24783510 ~ 24787085 (+) True G54430
TU67939 lncRNA upstream 672214 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 784714 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 1056488 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 1286123 23664157 ~ 23664652 (+) True G54238
TU68188 lncRNA downstream 213365 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 349624 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 388642 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 446034 25404670 ~ 25413822 (+) True G54580
TU68253 lncRNA downstream 531238 25489874 ~ 25493573 (+) True AMCG00009104
AMCG00009088 mRNA upstream 33065 24898116 ~ 24917710 (+) True AMCG00009088
AMCG00009083 mRNA upstream 68833 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009087 mRNA upstream 91545 24858013 ~ 24859230 (+) True AMCG00009087
AMCG00009084 mRNA upstream 106558 24818218 ~ 24844217 (+) True AMCG00009084
AMCG00009085 mRNA upstream 134253 24813179 ~ 24816522 (+) False AMCG00009085
AMCG00009097 mRNA downstream 73466 25032102 ~ 25037678 (+) True AMCG00009097
AMCG00009096 mRNA downstream 193162 25151798 ~ 25157551 (+) True AMCG00009096
AMCG00009104 mRNA downstream 531075 25489711 ~ 25493399 (+) False AMCG00009104
AMCG00009107 mRNA downstream 612692 25571328 ~ 25574564 (+) True AMCG00009107
AMCG00009108 mRNA downstream 626246 25584882 ~ 25587615 (+) True AMCG00009108
TU68059 other upstream 32912 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 134241 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 974869 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3656874 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3675421 21274611 ~ 21275354 (+) True G53915
TU68288 other downstream 626256 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2654947 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3807818 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 3970256 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 4145004 29103640 ~ 29106908 (+) True AMCG00009208

Expression Profile