RNA id: AMCG00009091


Basic Information

Item Value
RNA id AMCG00009091
length 2874
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00009091
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24934221 ~ 24942274 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTAACCGCTTAGGCCTTTTAACCGTGCTACCAAAAAGACAAGTCACTGGGGCTCCGATCAGGCTCGCACTgaacgtctctctctctctctttctctctgctttcGGCTATTATTGAAACAGGAAAGACAAAAAACGAAACAAGGGCAGCTACCTGAGAGTGAAAACGTTGGAGGGGGAGAGTCAGAACATACAGCGAGGCTCCTGCAGAGACGTTGCAGTGTGCCGGGACGAACCCTGAGTGTCATGACACCGCGAGAGCAGCTGAGAAAGATGTCAGCATTGGGAGAGCAGGGAGCTCTGGATGAGAAGCACTGGTATCGCCTGGTTAATGGCATGGCAGCAGGGGAattgagacagagacaggagctGATAATGCGGAGCCAGATGGCCATGAACCCTCAGCTTCTAGCTCCCAGTCAGCATAGGCTACAAGGCATTCCTACTCAGTTTGAGCCCCGGTTCATGGAGAGGGAGCTTGTGCCTCCAACTGAAATGGTGCCCTCTGAAGCCAGGCAGATACACATGGGCTCCCACCTGGGCCCCCCCATCCCTCCACACTCCAATGTCCTGCCAGGGAGAGGCTTTCCTGGAGCAGATGTAACCATGcctgtgtctttgttttctccTCCCTTTTTTCCCAGGATGGAAATGAATGCCATCCTGCACCAGAAGGAGCTGGAGAATGCCCACCAGAAAGGCCTGATGGGAATGGAGGCGCCCATGATGTACCCCGGCATCCCCGCCAATGCCATGGCGTTCCGTGGCAGGCAAAGACTCCCTGAGGGCCACCTTCCAAGTGATGTGTTTGTGCACCGCTCCACCCTGGAGGACCTGCAGGGCAATGCTGTGCTCATGTCCACCAGCCCCTACCCTCCAATCAGCACGCTGCACAGAGAAAGGGCACGGAGACCTGGGAGGAGGGCAACCAATCACAAGAGTGTGGATGGGAACGCCCTGGGTCCCAAAGGCCAATCAGAAGACAAGAACGTGGAGCAGAGTCCAGGAGCTTCAGGGGAAGAGAAGGAGGCAGAGGGCAAAGTGGAGTCAGGGAACGAGACCACAAGCAAACCGGATCAAGTTAAAATGGACGTTGAGCTGTCTTCAGGAAGTGTGAAAAACTATAAGGAGTGTGAGCCCGGGCTGAGGAAGAGCTGCAGTAATCATGAGAGCTGTACAGAGACACCCAACTGCAACACCACCTGCAGCACCAGTGACAAAGACCTCCCAAACCCCTGCTCCACCTTCCATGACAAATACTACCCTTCAGCCAACCCCCTGTCAAACTTACCTTATGGGTTTCCTATCCCTGGAAATGGACTGTTACCTCCTGGGTCTCACAGTGTTTTCCTCAATGGGGAAGAGATGTCCTCTGTTGAAGACATACGGAAGTGGACAGTGGAAGATGTCTACAACTTCATCAACAACATCCCAGGTTGTTCAGAATATGCTCAGACTTTCAAAGATCATGTCATCGATGGGGAGACCTTACCCCTCCTGACAGAGGATCATCTTCTGGACACTTTGGGTTTGAAACTAGGGCCGGCTTTGAAAATCCGATCTCAGGTGTCGCGGAGGCTGGGCAGTGTGTTCTACATGATGAACCTGCCTCTCGCTGCCACTTCCCTGCAGGCCACCCCAGAGAAAGCCTGCGGAGACCAGTCATCTGACATCAACTCCCCGCTCAACTGCAACAACGTGGATCTGCTAGGCAGTCCCTGTGCCCGGGAAACGGAGAGCACCAAACCTCCCGAACACAACGCAAGCCTTGAAAACCCGCCTACGCTCACTGAAACAACAGCCTGACATCAGGGACATATGTGCCCTAAATGAATTATTCACtctccattttcattttgaatgccCTTCAACTTCAGTTGTTTGAGTTGTCTGATGGGTCTTGATTTCCAACACCATCATTCCAGGATGCTGTGAAACAGGTCAGGTTTTTAACTAAGCCCCTATGAATTCAAATGTGAAAGGAATGTGAACACTGAAGGCTTGCTAAACTGATATTGTTGCTACATTACCAGACAACATCATaacactataatatatatatatatatatatatttttaattctctatatatatttaacccaCTTACCTACATGAATTAAATACTGATGTTTGCTCTGATTGGTAGGAGGGATAGtaatcttttttaattaaaaaataaaatactaaataagtgAGAAGCAATTGCTTCTAAATAAGCAATACTATAAATCTTACAAGTGTTTCATGCCGCATAGTAATTATAGAggcaattttaaaaacacattctttgtCAAAGCATTCTGGAATCATTGGGCCAAGAAGATTTCCAAGCTGAACTTGTATTTGTAACTAGCAAGTGTCTAGAATCCACTTAAAAATCGgactgtcttttttttgtttttctgaccaAAGAGGATCTCTGCTCTCCCAGCCTTAACTGGGGGTATTTTCACCCTTGCCTTTAGGAGATTACAATACATAACAAGATTCCTTTCTCTTGGACAGCATGTTAGCTTGTGTTAAAGAAACCAACCTGTTCACAAGTAAAGAGACAGTTCCATATCTGAATCTATGTATGCACTGGAACAAATGTCCTCAATTAGCCTTGAAGGTGAAGGACTATTTCATGGAAAACAGTTATTTAAGAGAAAACTGGAGCCATCActattttcattgttgtttttgttcgtGGTGCATTACTTAATATTTATACATCTCCATTATTAAATGAAAGTTGCTGGTTGTATGTATTcttgagagaaaacaaaaatgtttgtattgtatagGAACTGTTCAAATACCCAAAtgaaagtattgtatttttgtaatatatggTTTTGCTAATGTttgttacaataaatacattcaatttta

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68089 lncRNA downstream 49496 24882039 ~ 24884725 (-) True G54466
TU68073 lncRNA downstream 86392 24813553 ~ 24847829 (-) False G54450
TU68072 lncRNA downstream 86392 24843174 ~ 24847829 (-) False G54450
TU68071 lncRNA downstream 86392 24845261 ~ 24847829 (-) True G54450
TU68065 lncRNA downstream 144179 24788395 ~ 24790042 (-) False G54447
TU68189 lncRNA upstream 227957 25170231 ~ 25172840 (-) True G54548
TU68207 lncRNA upstream 341403 25283677 ~ 25284103 (-) True G54561
TU68225 lncRNA upstream 404938 25347212 ~ 25349010 (-) True G54578
TU68245 lncRNA upstream 518332 25460606 ~ 25462690 (-) True AMCG00009106
TU68247 lncRNA upstream 536414 25478688 ~ 25478901 (-) True G54594
AMCG00009090 mRNA downstream 1060 24921227 ~ 24933161 (-) True AMCG00009090
AMCG00009093 mRNA downstream 38821 24889931 ~ 24895400 (-) True AMCG00009093
AMCG00009086 mRNA downstream 128941 24792402 ~ 24805280 (-) True AMCG00009086
AMCG00009082 mRNA downstream 147132 24783510 ~ 24787089 (-) True AMCG00009082
AMCG00009075 mRNA downstream 504472 24395954 ~ 24429749 (-) True AMCG00009075
AMCG00009092 mRNA upstream 18319 24960593 ~ 24961927 (-) True AMCG00009092
AMCG00009095 mRNA upstream 20816 24963090 ~ 24967583 (-) True AMCG00009095
AMCG00009094 mRNA upstream 25643 24967917 ~ 24974656 (-) True AMCG00009094
AMCG00009099 mRNA upstream 174111 25116385 ~ 25143430 (-) True AMCG00009099
AMCG00009098 mRNA upstream 220311 25162585 ~ 25169182 (-) True AMCG00009098
TU67499 other downstream 2750656 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 4670136 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 4670136 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 7065525 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 7187178 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 210992 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 231403 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 1851267 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2671324 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 4116010 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile