RNA id: AMCG00009095


Basic Information

Item Value
RNA id AMCG00009095
length 1242
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00009095
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24963090 ~ 24967583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGTGTCGCCGAGCGCTATGCTGCAGTGTGCGTGGAGCTCAGGCTGCCTGCAAACCCGTACATCTTGCAGGTGCTGCAGGAGTCCCATAAGCAAAGCTCTCAGTCTTCTTCCAAAGATGGGAATATAATTAAACTTACTGGCAATAACCGGCTCATGACTGTTCAGAGACTGTCCGATAATGATGTTTTAGCTCTGTCGAAAACTCTCACCGACAATGTGTCTGTGACAGGCCTGGACTTGAGATACAACAACATAACTGATGAAGGGGCAGGGCACCTTGGGTCTCTCCTACAGGAGAATGGTGTTCTTCAGTACCTCAATCTAATGGGCAATGACATTGAGGCCAGTGGAGCAGAGGCCATTGCAAAAGCCCTGCATTGCAATGCAACACTGATGAAATTGCAGATGACGGCCAATAAAATGGGGAACAAAGGTGCAATGCACTTTGCTGCGATGCTACAGATCAATTCATCTCTAGAGGAGCTGGATGTTGGAGATTGTGATCTGGATACACAGAGTTTAATTGCCTTTGCTATCGTCTTGAATAACAACAGGAACATATGTGTCATCAATCTGAGTCGTCCCCTACTGTACAGCCAACAGGAGGAGACTACAGTACACATGGCTCACATGCTGAAAGTCAACCAGCACCTAAAAGAACTCCATCTGGGGAAACACGAGATGAAAGACTTTGGTGTGGAGAGACTTAGCGAAACCCTGAGTTTTAACGGCACTCTTCGTTATTTGGACCTCCACTGCAACAGCATCACACGTGATGGTGCAAAATGCCTGTCTGAGCTGCTGAAGCAAAACACACCGCTAGAGATACTGGACCTGTCCTCGAACCGCATAGAGGATGATGGAGCCATATACCTCAGTGAAGCCATTGCCTTGTACAACACAAATCTGAAAGCGTTGTCTATTCCAGGTAATAACATTGGGACACAAGGGCTGGTGTCTCTTGCTAAAGCTATGAGAGTCAATTCCACGCTTTCTCACATCTACATATGGGGCAATAAACTGGAGGAGCCAACCTGTGTGGCATTCTGCAGCATTATAGAAAGTGGGCGCCTCCCTCAGGAGAACACAGACGTTGCCCCGTACAGAGTTGAAGGTCGCACCCATCTCTCAGAGCTCTTCCATGGGCTCAGGAGACACTACTACTGGACCCCAACCTATGGCACGGATGGTGATCCTGCCTGCAACTCTGTGCTGGTCTTGAGGGACACTGCATAG

Function

GO:

id name namespace
GO:0046036 CTP metabolic process biological_process
GO:0046131 pyrimidine ribonucleoside metabolic process biological_process
GO:0046132 pyrimidine ribonucleoside biosynthetic process biological_process
GO:0046134 pyrimidine nucleoside biosynthetic process biological_process
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process biological_process
GO:0072528 pyrimidine-containing compound biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process biological_process
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process biological_process
GO:0009218 pyrimidine ribonucleotide metabolic process biological_process
GO:0009220 pyrimidine ribonucleotide biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68089 lncRNA downstream 78365 24882039 ~ 24884725 (-) True G54466
TU68073 lncRNA downstream 115261 24813553 ~ 24847829 (-) False G54450
TU68072 lncRNA downstream 115261 24843174 ~ 24847829 (-) False G54450
TU68071 lncRNA downstream 115261 24845261 ~ 24847829 (-) True G54450
TU68065 lncRNA downstream 173048 24788395 ~ 24790042 (-) False G54447
TU68189 lncRNA upstream 202648 25170231 ~ 25172840 (-) True G54548
TU68207 lncRNA upstream 316094 25283677 ~ 25284103 (-) True G54561
TU68225 lncRNA upstream 379629 25347212 ~ 25349010 (-) True G54578
TU68245 lncRNA upstream 493023 25460606 ~ 25462690 (-) True AMCG00009106
TU68247 lncRNA upstream 511105 25478688 ~ 25478901 (-) True G54594
AMCG00009092 mRNA downstream 1163 24960593 ~ 24961927 (-) True AMCG00009092
AMCG00009091 mRNA downstream 20816 24934221 ~ 24942274 (-) True AMCG00009091
AMCG00009090 mRNA downstream 29929 24921227 ~ 24933161 (-) True AMCG00009090
AMCG00009093 mRNA downstream 67690 24889931 ~ 24895400 (-) True AMCG00009093
AMCG00009086 mRNA downstream 157810 24792402 ~ 24805280 (-) True AMCG00009086
AMCG00009094 mRNA upstream 334 24967917 ~ 24974656 (-) True AMCG00009094
AMCG00009099 mRNA upstream 148802 25116385 ~ 25143430 (-) True AMCG00009099
AMCG00009098 mRNA upstream 195002 25162585 ~ 25169182 (-) True AMCG00009098
AMCG00009100 mRNA upstream 206258 25173841 ~ 25176277 (-) False AMCG00009100
AMCG00009102 mRNA upstream 327378 25294961 ~ 25301473 (-) True AMCG00009102
TU67499 other downstream 2779525 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 4699005 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 4699005 20252904 ~ 20264085 (-) False G53809
TU66751 other downstream 7094394 17868386 ~ 17868696 (-) True G53355
TU66702 other downstream 7216047 17736589 ~ 17747043 (-) False AMCG00009001
TU68185 other upstream 185683 25153266 ~ 25156338 (-) True G54544
TU68195 other upstream 206094 25173677 ~ 25176378 (-) True AMCG00009100
TU68523 other upstream 1825958 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2646015 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 4090701 29058284 ~ 29063030 (-) False AMCG00009215

Expression Profile