RNA id: AMCG00009096


Basic Information

Item Value
RNA id AMCG00009096
length 3458
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00009096
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25151798 ~ 25157551 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGACTTCCACACTGACACTGGACACTGAGAGCTGGGGAATcatttgctttctctctctctctctgttcattGCACTTGATGTCCGCCACTTGTTGAAGgaagcaaatacattaaataagTTGGCTGAGGATTGATTCCAGTCACCATGAAGCTGGCTTGGGCACTGCTGTCCTGCCTCTTGGTGGGAGTCATCAATCTGTGCCTCTcacaagaagaagaaactgCTCTAGAAGAACCAAGTGGACCAGATTCAGAGACACATAACGAGGTGGCAGATGACAGGAAGCCCTGTGCTGGTTGGATGGGAGGAGTACCAGGTACACCTGGACACAACGGTCAACCAGGCAGGGATGGACGAGATGGCAGAGAtggagaaaagggagagagaggagagccaGgtGAACCTGGAGAGAAGGGAGATCCAGGGGAGCACGGGGCTGAGGGTCCAGAGGGGCCCCGTGGCTTCCCAGGCACCCCAGGATTAAAGGGTGAGCGGGGGGAGAGTGCTTTCCTGTACCGCTCGGCCTTCAGTATCGGGTTGACCGACCGCACACCCATGCCCAATGTACCCATCAAGTTCAACAAGGTCTTCTACAATGACCAGCGGCACTATGATGACAGCACGGGCAAGTTCCGCTGCACCATACCTGGCATCTACTTCTTCACCTACCACCTCACCGTGTACATGAAGGACGTCAAGGTTAGCCTCTACAAGAATGACAAATCCATCATGTTTACTTTCGACCAGTTCCAGGAGAACAATGTGGACCAGGCCTCAGGCTCCATCATCCAGCACCTGGATTCAGGGGATGAAGTCTGGCTTCAGGTCTATGGCGAGGAAGACTACAGCGGGATCTATGCCGACAACATCAATGACTCCACCTTCTCTGGCTTCCTCCTGTACCCTGACATCAAACCAGTGAACGGTGACCGCTAGACATTCAGCAAAGACTGGggcattaattaataattaattaaatcctgCCTTTCATGTCAAATGTTAAGGGGACTTAACCTTATATAAAATAGCTTTGGACGATAGCTGATAATGAGAGTCATAAAGATAGGGGATGTTTTAGAATTGTTTGTCCCTACCCTGGGTCTTTGAAGAACctgtttagtttgtgtttgcttgtttttgtttggtttggcattctatttttagtttattcttTTATACtgcattcataaaatatataataattctggtgattattaaattatatttattttggtatcatCTGGGTCCTAATGggtttaaatatagaaaaaaaatgtgtaatggacaagtaaacaaactgcatatttaattatctcAACAATTAACTTAATTGACATGAACATATTCTATCATAGCAGTAACCCTTGGCAATGAGAGGTTTAAACTGATCATCTTGTGGGTAGGGAGAGGTTTATTGGTAATTCAGTGAAAGACATTTCGTATTATGCTTAAACAGTCAATGTAACCCAGTGAGCCGAGTACCGTGGTACTTTTTGCAGTAGGCTCATATGAAATAGAAtgtcaaatgaaaatatatttaccatCATGATCCGATAACATTTGGAAACCTCATACAATCCAGGTTTCTTGAGGTGTCTGTAAATCAGGAATAAAGTGATAATGGAGTGATAAACTGCTGGATATGTGAATGGTTTATAATAACATGAATTCCTGTGTTTATTTACCATCAAAAGCAGGCAATTGGCCTTTGTACAAATTATGTATatgtcaattatatatatttctgtaccaCACATCATTATATTCACATATATCCACAACCTTGTTTAATTCTGCTACCTCATTTGCCAAGTGTGGCTACTAGATGATCACAGGCCTGGGCATTACAAGAAATTAAACTGGTTTCAGAGATTAAAAGCTGATATCAAATAATATTAGACTAAAAACATGAAGTGCAATATACCTGTTGATATTATGGATCCAGGGTGGCAAGTATGCAAATAATGTGACTTAATGACCTGTATCCAAGTGTGCGGTGAATATGAAACATTGGAACAAGGCCCTATTATGAAGCACTAAATGTATGCCTCACAGTACGTAATAGTCACTTGTTGGCCTATGAGGAAAGACAAATGACAGGTCCACATTATGTGCTAATGATTGACCACTGCttgacaaaataacattttgttaaatattctGGATCAAATAAGGAGTACTTGTGTCTGTTCTGTAGCAGCTACAAAATAGACCTAAAATAACACTGCATGTGTCACTGGCAATAAATAACCTTGTTATTGCGTGTGTCCATTCTAATCTCTCTCCGCCTGTCTGGTGCAGACACATTACTCTAAAGGTCAGTTGACCACAGTCCAGTTCACCGGTTGTTGAAATTCAagatgtgtttcttttcttttctttttgtaagtttattttaatttaaaataccaaGGTCAGAAAGAACCAAAACTAAACACTCTTGCCAACTCACATGCATTTGAATATAGCAGTCATtgatagaaaaaacaacaacagtgagctctttgtgtatttttcatatatgctatttttaatattaccATTAggattatcatttttttaaaccatttgtaTTTAAGCTGGAATGCTACccaattatattaaacaattattaaatcagtcattttaataaaacaatgtatcagttttTGATAAGAGAGTACAtgcaagaggaggccattcattTTATCTTGCATGATTGATTGGTAGTTGATACTTGGTTCCAGATTTTTATTTATCCAGATCCCCACTACTCTTTGACTTTTAGTCCTTAACTTCCTTATTCTAAAATTCCACTGTTGACAAATCATCCTGGTTTCACTGATAAGAGTTGAGCTGACTTCCTTATAGCCTGTCAGCATATGTCATACCgttgagtcagtcagtcaggccaCACTTTTAACAGTCCAATATCGATTCCTGCTCTGACATGACAAGTAATTGTCCATGAGTGTATTGGTAGCATCTGATTGTAACCAGTGAATATAGGGTACCATACAGTTCATCTGTATACTGTGGAGATCCAGCTTGTGGAAACTGGCAGCCCTTCTAAGGGTTCTCCCAGAGCTCATTTATCACTCACAACTGCTCAGAACACTCTTAATATAGCATCACACGTGTCCCTAATTTATGAGGCGAGGCAAAAGAGCTTGAAATAAAATCCTAGCTCAGCCCCACAGAAACGTGAGACGTAATTTTCATTCGATTTTGGGGAGCTTTACTATATTTGCATTCAAGACCTCCAATTGCTAGACATGCCCTAGGTTTTTGAAAGTATGAGATCATTGGTGTTGCTGAAGGATTGGGCTGAAAGTACTATTATCAGGGTGTTTGAAGAACTCATGGTATTTTAATGGTTtcactgtcttttgttttttaattattcttaaacCTGGTCTGCTTCTGCTcagagtaaattaataaataaacaaacaagggaCAACTTTGTTCTGGAA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K07296 ADIPOQ, ACDC; adiponectin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68038 lncRNA upstream 364713 24783510 ~ 24787085 (+) True G54430
TU67939 lncRNA upstream 873237 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 985737 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 1257511 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 1487146 23664157 ~ 23664652 (+) True G54238
TU68188 lncRNA downstream 14450 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 150709 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 189727 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 247119 25404670 ~ 25413822 (+) True G54580
TU68253 lncRNA downstream 332323 25489874 ~ 25493573 (+) True AMCG00009104
AMCG00009097 mRNA upstream 114120 25032102 ~ 25037678 (+) True AMCG00009097
AMCG00009089 mRNA upstream 193162 24950775 ~ 24958636 (+) True AMCG00009089
AMCG00009088 mRNA upstream 234088 24898116 ~ 24917710 (+) True AMCG00009088
AMCG00009083 mRNA upstream 269856 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009087 mRNA upstream 292568 24858013 ~ 24859230 (+) True AMCG00009087
AMCG00009104 mRNA downstream 332160 25489711 ~ 25493399 (+) False AMCG00009104
AMCG00009107 mRNA downstream 413777 25571328 ~ 25574564 (+) True AMCG00009107
AMCG00009108 mRNA downstream 427331 25584882 ~ 25587615 (+) True AMCG00009108
AMCG00009111 mRNA downstream 466246 25623797 ~ 25639855 (+) True AMCG00009111
AMCG00009109 mRNA downstream 509969 25667520 ~ 25674012 (+) True AMCG00009109
TU68059 other upstream 233935 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 335264 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 1175892 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3857897 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3876444 21274611 ~ 21275354 (+) True G53915
TU68288 other downstream 427341 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2456032 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3608903 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 3771341 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 3946089 29103640 ~ 29106908 (+) True AMCG00009208

Expression Profile