RNA id: TU68253


Basic Information

Item Value
RNA id TU68253
length 1402
lncRNA type sense_over
GC content 0.35
exon number 5
gene id AMCG00009104
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25489711 ~ 25493573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTACGAACCCCAGCAGACCCAGAAAAGCCACAAGTGATGTCCCATCAGTCTTATAAAAGCGAAGAAATAAGCTTGGCTGCACATACAGACACCACCATTGACCCTCCAGCAGAATGTCTAGCAAAAGACTACTCCTTGGGACCCTACTGTCCGGATTCATTCTGAGCATAATTTTTGTGCAAAGTTTTGCATATGGCCCAATGACCCATGACTGCTGTATTAAATACACCCAAAAACCTGTGCCCCTCAAGGCAATCAAAGGGTTTGTTGAACAAAGTTCATTGGAAGTCTGCAGAATAGATGCAATCAtATTCCACACTAttgctgaaaagaaaatatgtgcCAATGGAAAGGAAGCCTGGGTCAAGAGAGCACTGAAAAAGCTAAGCTCCAGACTGAAGCAACTTGCTAATACCGGATCAGATGGAAATGATGAAGAGAAAAAAGCTTAAGAGCTttactgaaaaaactaaaacataaacaaatgcaaaaggcaTAAATATAATGCTGTTCATCTATTGCAAATTATATGCTAAGCCCCACTGAAATATCAATTACTCTTATTATCACAAATACATCTATATCTCTATCTATATCCATATCTCACAAGTCAGTCTATATCAAACCACTGCTAGATAAAGGCctcccaaagatgtttccacttgcttcaagctgcaatatatatatatatatatatatatatatatatatatatatatatatatatttccatatatatacaggtactaaattgtacattttgctaAAACGTTTCATTTGGTTTTATGTCATTTCTAATAAAAGTAAGAGTGAACTGAATGATCTCGTCTCTTTACCTGGGTATTGTATTCAAAAAAGGGAAAGAGTTCAGTACAATAGATCTGTGGAATGACATCACCTACTTCCCTGATTGAGCAATAGCTACAGTGTGATGAGACAAAGAACTTGTGCTGGGAAATTACATCCAACTTAGAGACAAAGCTTCAGAGGCAGGGAGAATGTGAACTTTACCCACGCATTACATAGTAAATCTGTTAATAAATCATGGTATTGTGTGGGGAAAGTTGGGATGATCTTATATGAAGCATATATTGTATGCTTAGCTGTCATTAGTTATATAAACAAGTAATGGTAATATCCTTCAAATATTCAATAAAACTGCATAGAGCtagaagaaaacatgaaaaatgggAACATGTAcaatttgtctgtgtgtgtatgtgtgtgtgtatatatatatatatatatatacacttgtCTGTAGCTATCACCCTCAAGTAGAGTGTCAGAAATGTATGAGGAAGTGCATTCTGTGCTTtgggaagtaaaaaaaaaaaaacaagaaaacaatgtaaacacaataCACTTTTGAAATAAGGGACATacccttttaataataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68232 lncRNA upstream 76052 25404670 ~ 25413822 (+) True G54580
TU68212 lncRNA upstream 140891 25347278 ~ 25348983 (+) True G54566
TU68209 lncRNA upstream 181379 25308260 ~ 25308495 (+) True G54563
TU68188 lncRNA upstream 317010 25172001 ~ 25172864 (+) True G54547
TU68038 lncRNA upstream 702789 24783510 ~ 24787085 (+) True G54430
TU68263 lncRNA downstream 22800 25516373 ~ 25517909 (+) True G54608
TU68264 lncRNA downstream 27446 25521019 ~ 25521314 (+) True G54609
TU68374 lncRNA downstream 913964 26407537 ~ 26407814 (+) True G54705
TU68381 lncRNA downstream 995576 26489149 ~ 26491161 (+) True G54711
TU68395 lncRNA downstream 1044746 26538319 ~ 26540200 (+) True G54724
AMCG00009096 mRNA upstream 332323 25151798 ~ 25157551 (+) True AMCG00009096
AMCG00009097 mRNA upstream 452196 25032102 ~ 25037678 (+) True AMCG00009097
AMCG00009089 mRNA upstream 531238 24950775 ~ 24958636 (+) True AMCG00009089
AMCG00009088 mRNA upstream 572164 24898116 ~ 24917710 (+) True AMCG00009088
AMCG00009083 mRNA upstream 607932 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009107 mRNA downstream 77755 25571328 ~ 25574564 (+) True AMCG00009107
AMCG00009108 mRNA downstream 91309 25584882 ~ 25587615 (+) True AMCG00009108
AMCG00009111 mRNA downstream 130224 25623797 ~ 25639855 (+) True AMCG00009111
AMCG00009109 mRNA downstream 173947 25667520 ~ 25674012 (+) True AMCG00009109
AMCG00009110 mRNA downstream 199913 25693486 ~ 25716048 (+) True AMCG00009110
TU68059 other upstream 572011 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 673340 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 1513968 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 4195973 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 4214520 21274611 ~ 21275354 (+) True G53915
TU68288 other downstream 91319 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2120010 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3272881 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 3435319 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 3610067 29103640 ~ 29106908 (+) True AMCG00009208

Expression Profile