RNA id: TU68271


Basic Information

Item Value
RNA id TU68271
length 980
lncRNA type sense_over
GC content 0.34
exon number 4
gene id AMCG00009105
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25529829 ~ 25531566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACACTCCTGCATATCCTGATCATAAAGTAACTATCTCACctcatctcatctcatctcaACTATCATGCAACTCCTAGGCAACAGCAAACTGGCATTTACATGCTGCTTACTTATAATGGGTTTGACCTTTCATTCCTGTGACAACATAAAGGTGCACACCTGCTGCGAAAGCACGAGCAGGCGTATCATTCTCACCCCAATCACAGGCTATGTACTACAGAACAATAAGCCACCATGTGTGGAAGCTGTGATATTCATAAGTGAAGGAAAGCAATATTGCAGCAATCCCAATACACGATGGGCCAAAAAAAAGATTGAAGAACTTAAAAAGGCGGAAGCTGAAAACCAAaaagtgacagaaaacaaagaaaaagaaaaaacacctgcTTCACAATAATATCTCTTCAATCCCAACACTATCTAACTAAGTCAGTCAAAATTTCTGGTTTGAGGTAACTTCCTGGATTGCAGCAAAGCACATGCCAGTGAAGAGAGAACCACAGCTTTGTGGATTCTGTGGCACTAGTTCCTGCAAAGTgccataaacacacaaaagtaTCTGCAATATTTGACGTTTCCCAGAAGTGATAAGCTGAAGCTTAGGTAGAAGAGTgttaagaaaagaaagaatatacaaatttcaaatttcagttttcattttctacaAGATATTGTGCAGTTTATAGGATAATACTTGCAATTGTCTGTTTGAGACTCTGTGGGCATTTATCTCCcaggaatatttaaaatatgtaaatgaatggttactatattataaatatatttatgcaatatttatttttatacattcacAGTTTTACACAAATTGcacattaaaactattaaatattaacttatttatttatttgtgttggtaaccaagaatatttttatttaagaactgtattaacattgtaattatttatttgtgttaaaaatgtaattaatgtttatttatctgtgttgTATTGATAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68269 lncRNA downstream 5804 25522121 ~ 25524025 (-) True G54613
TU68265 lncRNA downstream 14811 25512833 ~ 25515018 (-) True G54610
TU68252 lncRNA downstream 41201 25486977 ~ 25488628 (-) True G54598
TU68250 lncRNA downstream 43341 25486070 ~ 25486488 (-) True G54597
TU68247 lncRNA downstream 50928 25478688 ~ 25478901 (-) True G54594
TU68350 lncRNA upstream 558814 26090379 ~ 26090785 (-) True G54682
TU68366 lncRNA upstream 718981 26250546 ~ 26250857 (-) True G54697
TU68375 lncRNA upstream 876018 26407583 ~ 26407864 (-) True G54706
TU68408 lncRNA upstream 997674 26529239 ~ 26532315 (-) False AMCG00009121
TU68409 lncRNA upstream 997674 26529239 ~ 26532315 (-) True AMCG00009121
AMCG00009106 mRNA downstream 67174 25460619 ~ 25462655 (-) False AMCG00009106
AMCG00009101 mRNA downstream 107016 25404668 ~ 25422813 (-) True AMCG00009101
AMCG00009103 mRNA downstream 161415 25350519 ~ 25368414 (-) True AMCG00009103
AMCG00009102 mRNA downstream 228356 25294961 ~ 25301473 (-) True AMCG00009102
AMCG00009100 mRNA downstream 353552 25173841 ~ 25176277 (-) False AMCG00009100
AMCG00009112 mRNA upstream 355846 25887411 ~ 25931495 (-) True AMCG00009112
AMCG00009113 mRNA upstream 410560 25942125 ~ 25950002 (-) True AMCG00009113
AMCG00009114 mRNA upstream 527976 26059541 ~ 26060656 (-) True AMCG00009114
AMCG00009118 mRNA upstream 943114 26474679 ~ 26483701 (-) True AMCG00009118
AMCG00009120 mRNA upstream 959312 26490877 ~ 26494273 (-) True AMCG00009120
TU68195 other downstream 353451 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 373491 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 3346264 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 5265744 20200747 ~ 20264085 (-) True G53809
TU68523 other upstream 1261976 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2082033 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 3526719 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 4129395 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 4718306 30249871 ~ 30254483 (-) True AMCG00009241

Expression Profile