RNA id: AMCG00009106


Basic Information

Item Value
RNA id AMCG00009106
length 927
RNA type mRNA
GC content 0.33
exon number 4
gene id AMCG00009106
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25460606 ~ 25462690 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTATTATAGCAAGAGTCAAATTGTTCACTCCGTAAAACTCAATACAATGGCTGTCAAGTTCTTCTGTCTGGCGCTGCTGGGACTTGTGGCTCtgagtttgtttgctttgcagACCGAAGcagGTCCGGGGAGTTGTTGCCTCTCGTATTCAAAGAATCGCTTGCCGTGCAAAGTCATCAAGGGCTACACGATCCAGTCTGTGAAGGATAACTGCAACATTGACGCGATTTTGTTCCACACAAATGGGGGCAAAACCCTCTGCCATGACCCCTCAAAAGCCTGGGTAATGGAGAGAATTCACTGCCTGAAaaaaaaggcagagaaCATGGCTTGATAAAATCCTGGCACACGAAACACAATGGTGTTATGGAATTCATGTTAATGATGTCAAATTTTCAGATACataatttgttgtgttttagtCTACCTTTATTATTAgacctatatgtatatatgtgtatgtgtatttaatgctttatacatggttatttatttcagttatttaattatttaaagttagATATTATTTTGATGGGGAAAATGAATGGTCTTATCTGGTATCATGCCATGAAGCaatgataaattattattgaaatgtttttcattgtataCTTATTCATATCTACTATGAAAGTCTAAATTGATGTTCTGTTTTATAAATAGGACTTAAGTAAAGTATCAATGTTAAGATACTATAATGATTTATACAACAAACgttaaacatttttatgttgtaataggtattgcaaaatatttttgcattatttcatttcaatagcaaCTGAGATGCATCTGTAAATGGAATTATGTTCAAAGTATGGAGTTCTTATAGAATTCATTATATAACCATTCTGTTATATTTAAGCATGTATAACATGTATCCTTATTTGATACTacaagttacaaaaaaaataaaaactccgC

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005125 cytokine activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68225 lncRNA downstream 111609 25347212 ~ 25349010 (-) True G54578
TU68207 lncRNA downstream 176516 25283677 ~ 25284103 (-) True G54561
TU68189 lncRNA downstream 287779 25170231 ~ 25172840 (-) True G54548
TU68089 lncRNA downstream 575894 24882039 ~ 24884725 (-) True G54466
TU68071 lncRNA downstream 612790 24845261 ~ 24847829 (-) True G54450
TU68247 lncRNA upstream 16033 25478688 ~ 25478901 (-) True G54594
TU68250 lncRNA upstream 23415 25486070 ~ 25486488 (-) True G54597
TU68252 lncRNA upstream 24322 25486977 ~ 25488628 (-) True G54598
TU68265 lncRNA upstream 50178 25512833 ~ 25515018 (-) True G54610
TU68269 lncRNA upstream 59466 25522121 ~ 25524025 (-) True G54613
AMCG00009101 mRNA downstream 37806 25404668 ~ 25422813 (-) True AMCG00009101
AMCG00009103 mRNA downstream 92205 25350519 ~ 25368414 (-) True AMCG00009103
AMCG00009102 mRNA downstream 159146 25294961 ~ 25301473 (-) True AMCG00009102
AMCG00009100 mRNA downstream 284342 25173841 ~ 25176277 (-) False AMCG00009100
AMCG00009098 mRNA downstream 291437 25162585 ~ 25169182 (-) True AMCG00009098
AMCG00009105 mRNA upstream 67175 25529830 ~ 25531566 (-) True AMCG00009105
AMCG00009112 mRNA upstream 424756 25887411 ~ 25931495 (-) True AMCG00009112
AMCG00009113 mRNA upstream 479470 25942125 ~ 25950002 (-) True AMCG00009113
AMCG00009114 mRNA upstream 596886 26059541 ~ 26060656 (-) True AMCG00009114
AMCG00009118 mRNA upstream 1012024 26474679 ~ 26483701 (-) True AMCG00009118
TU68195 other downstream 284241 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 304281 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 3277054 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 5196534 20200747 ~ 20264085 (-) True G53809
TU68523 other upstream 1330886 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 2150943 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 3595629 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 4198305 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 4787216 30249871 ~ 30254483 (-) True AMCG00009241

Expression Profile