RNA id: AMCG00009115


Basic Information

Item Value
RNA id AMCG00009115
length 3392
RNA type mRNA
GC content 0.34
exon number 8
gene id AMCG00009115
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26521864 ~ 26528491 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGACGGCAATGTATCTTGAACATTATCTGGACAGTATTGAAAACCTGCCCTGTGAACTGCAGAGAAACTTCACATTAATGCGTGAGTTAGATAACAGGACAGAAGaaaagaaagcagaaattGACAAGCTGGCTGCAGAATACATTGCAAATGTGAGGAACCTGGCTTCGGAGCAGAGAGTGGAGCACTTACACAAGATCCAGACGGCTTACAGCAAGTGCAAAGAGTACAGTGATGATAAAGTGGATAAGCACATTCGTAGGCTGGATGCAGACCTGGCTCGCTTTGAGGCAGACCTGAAGGAAAAACTAGAAGTGAGCGGCTATGAGAGTCCTGATGGGAAAGGCATGAAAAAGGGCAGGAGTCAAAGGGACAAGAGGGGGTCtagagggagggggagaaagggGTCTGATGAAGACTCtccaaagaagaagaaaacaaaaacgagCAGCCCAGACTACAGTGACTCTGTACTAGCAGTACACCCATCTGATGTTTTGGACATGCCAGTTGATCCCAATGAGCCTACGTACTGCCTGTGTCACCAAGTGTCATATGGAGAGATGATTGGCTGTGATAACCCTGATTGTCCAATAGAGTGGTTTCATTTTGCGTGTGTGGATCtgacaacaaaaccaaaaggaaaATGGTATTGTCCTCGCTGTATCcaggacagaaagaaaaaatgagaaTTAGAATTGTTTtccagaatatatatatatatatatataacatacacgcatacaaatatatacatatattttccattCTAACTTGGCCGATTCATATGAACAGTCAGAATGTTGAGGTCTTTTTAAAATTGCTGTTAATGATACTTGAAATATGCATCAAGCCCTGTCCACTTTATGAAATGTAGTATTtgactaaacaaacacaaaacaacctCAGTAGACTACAACAGATGTGACCAGACTCATTATTATAAAGATGGACCCTCACTAAAGATGGAAACAGTCAAaggtctgttgttgttgtgttttgtctgAATTTTTTACCACCCTACCTCACAGGTCGAGCTCTTTTAGTGCTCTTGAGCCCTGTCTTAGCTCTTAAGGAAGACTATAGTACAAATCCAGCTTgagccaaaaataaaattgattcaCAACCTCTGTCCAATCAGACTTTTGTGATTGAGCTTTTGGTTTGGACAGTACTTTTGGTCAGAACAGCATGTTTTTAACAGTCCTGTTTTGATACAAAGTATTTTCAGAATGCTGATTGAATCAATCTCCTGCCGCTGCAGTTCCCTATGGGGAAATGTCAAAATATATCAGATTTTCAGAAATATTCTGAAGAGATGTGACCAATTTTTGGCATGCAAAGACCTGAACATGTTTGCACTTTTAAAGAAGCCCTTCTCTGCACTGTGCTACAGCCCTAATGAAATACATACTTCCAAATCTGAGCACATACAACATGGTAACATTTTGGGATTTCTTTCTGAAAAGCACACTTTTATTgacacttttaaaacatgttcatatAGAAAGAGTgagataaatatatagttatttttaaatcttatgtATTACAGAAGTTAACTTAAGCAACTAATAATTAGTAAAAGGTAATGCAAAAGCTGGTGTAATTTGTAATAGTTGTAATAagttgtaatatttttaaacatttaaatatttaaacatgttttaatgtatttacatctTCTTCATTGACTTGGTTATAGATGAATACTGTGTTCCTACAAAGTATCCAGTTTAAAAATCTAATAATATTCAAACTCAAAATGACTCAAAATAGTTGAGGTTAATTCAGGATATGTCTCCGCCTGTTCCAATGGGCACATAAACAATATGTTTCACAGTAGACAGGTTGCTATTGCCATACTAACCTTGTAAATCTTGTAAAATGCACTGAGTTATTTCATGCCAAAAATGAGGAAAATCTGTGGTTGAAACTATTGATGATTTAAAACCTTCATTGAATTAGatcatttatgtgtgtgtgtgtggatattagatttttttattaactaaactgtgattttttttattttttaaaaataatggatGCTATAGAGTTAGTCTTGTTTTGAAGAATATTTATATAGATGTGTACGTACAGTATTCAATTGttgtcaataaataaacatcaactGTCATTTATCACAGATAAGTATCCCTGTCTGTATATGTGCTGCTAGATAATGTTCATAAGTGTGGGCTCTTGTAGGAGCACTggtatattattttgaaagaagGATACATTTTGGACAACCAAATATGAGAGAAAATCTATAGTACCGAGTTCAAGAAAGGCCAGTTGCTTATTACTAGTCAAactccagcaaaaaaaaaagatttaagtTTGAGGTATCTTGGGCATTGTTATCAGAATTTGcagtaaattataaatgtttatgtatCAAGATATTGAAACCAAATCCAGATTTTGTATAATAGGTGGGGAAAACATAACTGAATTTCTTAGCCATATTTGTTACTTGTAATTCTTGCAAACCATAAATGTGGGTATATGCACACACAAGAACATAATTAGAAATGTCAAGATGGTTAATTACCAATATGGTTACCAAACTTAATATTTAGTATCATGTTGTTTCTTAATGACCTGTTTTTTCATGTCTGTGCAATAGGTACAACCTCGTTATATTTTCTAAACCAATTTTACTTTCTCTTTTCATGCAAGACTTCCACACATGTGCACTGGGCTCTGTCTAGATTATAGCTGGGATGGATCAAAGAGAAGaccatttgaaatgtgtattgcaAACCCCAGCATTTAAGTGAAGCTTCAGTTAACACAGTGTGAAAGTGCAATAGCATAATGAAACATGCAAAGGATGTATATTTATACTTAAATAATAAGGCAGAATATTGACTGACCTATTCAAATATGATCAgtccaatacaaatataaattggataggatatttttattaatttaaacaagataCATTTTGTCATTAACTACTTTTTCTGTTGAGTGCTCTGCAAACTTAAAATCTAACAAAACTATTACAGCCTTTTGTATTCCACTCACATCTTTTAGaggataattaaaaatgaaatgtcatatGACACCTTTTCAAATTCCATGAACATTTTAGCCAATGCTGTTGTTACAACACAATggtgatataaaaaataaatacataaattacagtcCAGGgaccatattaaaataaacataaaaacaggaaTAGATCTATCCTGTGGCTTTAAATTGAATGTGGTGTTTTTCCCATATATGTTGTTTCCTTTGTATGAAAAAAACTTGGGTgtaaatcattttatatataaatatatatatataacaaaaaaaaactgaattgtatATCTGAATTTTTGATTATGTCacagaaaatgttatattgttatgAATAAAG

Function

GO: NA

KEGG:

id description
K11345 ING5; inhibitor of growth protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68381 lncRNA upstream 30703 26489149 ~ 26491161 (+) True G54711
TU68374 lncRNA upstream 114050 26407537 ~ 26407814 (+) True G54705
TU68264 lncRNA upstream 1000550 25521019 ~ 25521314 (+) True G54609
TU68263 lncRNA upstream 1003955 25516373 ~ 25517909 (+) True G54608
TU68253 lncRNA upstream 1028291 25489874 ~ 25493573 (+) True AMCG00009104
TU68395 lncRNA downstream 9828 26538319 ~ 26540200 (+) True G54724
TU68461 lncRNA downstream 121991 26650482 ~ 26660346 (+) True G54777
TU68501 lncRNA downstream 259333 26787824 ~ 26792401 (+) False G54806
TU68505 lncRNA downstream 263082 26791573 ~ 26792401 (+) False G54806
TU68507 lncRNA downstream 265046 26793537 ~ 26796768 (+) True AMCG00009129
AMCG00009117 mRNA upstream 12225 26497852 ~ 26509639 (+) True AMCG00009117
AMCG00009110 mRNA upstream 805816 25693486 ~ 25716048 (+) True AMCG00009110
AMCG00009109 mRNA upstream 847852 25667520 ~ 25674012 (+) True AMCG00009109
AMCG00009111 mRNA upstream 882009 25623797 ~ 25639855 (+) True AMCG00009111
AMCG00009108 mRNA upstream 934249 25584882 ~ 25587615 (+) True AMCG00009108
AMCG00009116 mRNA downstream 3957 26532448 ~ 26538242 (+) True AMCG00009116
AMCG00009123 mRNA downstream 37197 26565688 ~ 26575442 (+) True AMCG00009123
AMCG00009122 mRNA downstream 107996 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009128 mRNA downstream 254046 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009129 mRNA downstream 265699 26794190 ~ 26796767 (+) False AMCG00009129
TU68288 other upstream 934254 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1604001 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 1705330 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2545958 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5227963 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 1085092 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 2237963 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2400401 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2575149 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2575149 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031284 False 1181 mRNA 0.40 8 NC_007113.7 36606019 ~ 36608762 (+)
grasscarp (Ctenopharyngodon idella) CI01000186_00091411_00095100.mRNA True 1800 mRNA 0.42 9 CI01000186 90979 ~ 95538 (+)
mexican tetra (Astyanax mexicanus) TU312698 True 1072 lncRNA 0.47 8 NW_019170736.1 365622 ~ 374394 (+)