RNA id: AMCG00009117


Basic Information

Item Value
RNA id AMCG00009117
length 1500
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00009117
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26497852 ~ 26509639 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTGCGTCCTACACTGGAGCAGATCGCTGACCAGGTGTGCGGCAAGGATGTGGAATGCGTGTGCGAGGGGAACTTGTGTGAGCTGCCGGCACGCTGTCGGGGTGAGCAGTGCTTCTCCTCGATGATCGTGAGCAGAGAGGCCTGGGTGTTTCAAAGGGGCTGCTTGAGAGACCCAGAGAAGGTCCGCATGATATGCTCGACCCCTCTCTCCGCCAGCCAGGTGGTGGAGTGCTGCCTGGGTAACCTGTGCAACTGGAACATCAGCTCAGACTCGCTGCTGCCCATGCTGCTCATGGtGCCAGAGGGGGAACCTATCCGGTATGGTGTGAGCACGCTGGTGATCTTCGTGGTCGGGCCATttgtggtgctgctgctgctgtctgtgctGGCCGTGCTGGGGTGTCGGCGGCTTCACCACAGCCGGCTGCAGAGGCTGCACGAGCTGGACGCAGAGCAGGGCGCCATCGACGGCCTCATCGCCTCCAACGTGGGCGACAGCACTCTGGCGGATTTGCTGGATCACTCGTGCACGTCAGGCAGTGGCTCTGGTCTGCCATTCCTGGTACAGCGGACAGTGGCTCGGCAGATAACCCTGGTGGAGTGTGTTGGGAAGGGGCGCTATGGGGAGGTCTGGAGAGGACAATGGCAGGGAGAGAACGTGGCGGTAAAAATCTTCTCCTCACGAGACGAAAAGTCGTGGTTCCGAGAGACCGAGATCTACAACACGGTTCTGCTTCGGCACGAAAACATACTGGGTAGGGAAGGAGAAGACATGACATCTCGGAACTCGAGCACACAGCTGTGGCTGATCACGCACTACCACGAGAACGGCTCGCTCTACGACTACCTGCAGCGGGTTGCTGTGGAGACCGTGGATGGGCTGCTCATGGCCACCTCTGTGGTGAGCGGCCTGGTCCACCTGCACACCGAGATCTTCGGCACCGAGGGCAAGCCGGCCATCGCCCACCGCGACCTCAAGAGCAAGAACATCCTGGTGAAGAAGGACCTGCGCTGCTGCATCGCCGACCTTGGACTGGCAGTTACACACTCCCAAACTGACAATCAGCTAGACGTAGGCAATAATCCAAAGGTGGGCACCAAGAGGTACATGGCCCCGGAGGTTCTGGACGAGTCCATTCAGACTGACTGCTTCGATGCCTACAAGCGTGTTGACATCTGGGCCTTTGGGCTCGTGTTGTGGGAGATTGCCCGGAGGACCTACAGCAATGGCATTGTTGAGGAGTACAAACCTCCCTTCTATGACCTGGTGCCAAATGACCCCAGCTTCGATGACATGCGCAAAGTGGTTTGTGTTGAGCAGCAAAGGCCCTTCATTCCCAATAGATGGTTCTCTGATCCAACCCTGTCAGCACTGGCGAAGCTAATGAAGGAGTGCTGGTATCAGAACCCCTCAGCCAGGCTCACAGCACTACGCATCAAAAAGACTCTGGACAAAATCCACAGCTCCCTGGAGAAGGGCAAAGCAGACTGCTGA

Function

GO:

id name namespace
GO:0003342 proepicardium development biological_process
GO:0021556 central nervous system formation biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0003146 heart jogging biological_process
GO:0046588 negative regulation of calcium-dependent cell-cell adhesion biological_process
GO:0042475 odontogenesis of dentin-containing tooth biological_process
GO:0051216 cartilage development biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0003230 cardiac atrium development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0035124 embryonic caudal fin morphogenesis biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0060030 dorsal convergence biological_process
GO:0001944 vasculature development biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0005938 cell cortex cellular_component
GO:0070724 BMP receptor complex cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K04675 ACVR1, ALK2; activin receptor type-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68381 lncRNA upstream 6691 26489149 ~ 26491161 (+) True G54711
TU68374 lncRNA upstream 90038 26407537 ~ 26407814 (+) True G54705
TU68264 lncRNA upstream 976538 25521019 ~ 25521314 (+) True G54609
TU68263 lncRNA upstream 979943 25516373 ~ 25517909 (+) True G54608
TU68253 lncRNA upstream 1004279 25489874 ~ 25493573 (+) True AMCG00009104
TU68395 lncRNA downstream 28680 26538319 ~ 26540200 (+) True G54724
TU68461 lncRNA downstream 140843 26650482 ~ 26660346 (+) True G54777
TU68501 lncRNA downstream 278185 26787824 ~ 26792401 (+) False G54806
TU68505 lncRNA downstream 281934 26791573 ~ 26792401 (+) False G54806
TU68507 lncRNA downstream 283898 26793537 ~ 26796768 (+) True AMCG00009129
AMCG00009110 mRNA upstream 781804 25693486 ~ 25716048 (+) True AMCG00009110
AMCG00009109 mRNA upstream 823840 25667520 ~ 25674012 (+) True AMCG00009109
AMCG00009111 mRNA upstream 857997 25623797 ~ 25639855 (+) True AMCG00009111
AMCG00009108 mRNA upstream 910237 25584882 ~ 25587615 (+) True AMCG00009108
AMCG00009107 mRNA upstream 923288 25571328 ~ 25574564 (+) True AMCG00009107
AMCG00009115 mRNA downstream 12225 26521864 ~ 26528491 (+) True AMCG00009115
AMCG00009116 mRNA downstream 22809 26532448 ~ 26538242 (+) True AMCG00009116
AMCG00009123 mRNA downstream 56049 26565688 ~ 26575442 (+) True AMCG00009123
AMCG00009122 mRNA downstream 126848 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009128 mRNA downstream 272898 26782537 ~ 26785790 (+) True AMCG00009128
TU68288 other upstream 910242 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1579989 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 1681318 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2521946 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5203951 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 1103944 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 2256815 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2419253 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2594001 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2594001 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile