RNA id: AMCG00009119


Basic Information

Item Value
RNA id AMCG00009119
length 1506
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00009119
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26514126 ~ 26520134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGCCTTGTCACCAACCTGCCTCCTCCCTGCCTTTGGAAGGGTGCTTGCACTGAGAATTAATCTTCCTGGGCTGACAGAGACTAGACAAGGCCGGTGCGTCCACAGCGGGGCAGTAAGAACCAGCCAGGCTTCCACAGTGCACAGGCTCCCCTTCACTACTGTCTCCCAGCAAGACCTGGACTTCTTTGAGCAGTTGCTGCCTGGGAGAACCATCACTGACCCTGAAGTGCTAGAGTCCAACAATGTAGACTGTGAGGTGCTCCTCAGACCTCAGACTACAGAGGAAGTCTCTCAGATTCTCAGGTATTGCAACGAGCGCAGACTGGCGGTGTGCCCCCAGGGTGGGAACACAGGGTTGGTGGGGGGCAGTGTGCCAGTGTTTGATGAGATCattctctccacctctctcatGAACCAGGTCCTGAGCTTCGACAGCATATCAGAAAACCTCTCGCACTTCCTGGAGGAGCGAGATTTCATCATGCCCCTTGACCTGGGAGCCAAGGGCAGTTGCCACATTGGGGGCAATGTTGCGACCAATGCTGGGGGGCTGCGATTGCTGCGATATGGACCTTTGCGAGGGACGGTGCTGGGGCTGGAGGCGGTGCTCGCTGAAGGCAAGGTGCTGAACTGCCTGGCTGCCCTGAGAAAGGACAACACTGGCTATGACCTCAAGCAGCTGCTCATTGGGTCAGAGGGCACCCTGGGGGTCATCACTGCCATCTCCATCATGTGCCCACGCAAGCCAAGATCAGTCAATGTGGCCTTTTTGGGTTGCTCCAGTTTCCAGCAGCTGCTGGATACCTTCCAGCACTGTAGGAGCATGCTGGGAGAGGTCCTGTCTGCATTTGAGTTCTTGGACAGCGCCTGCATGAGACTGGTGGAGGACCACCTGAGACTGGCCAATCCCATCAAAGAGAGCCCATTCTACATCCTCATAGAAACAGCGGGCTCTAATGCAGTACATGATGAGGAGAAACTCCATAACTTTCTTGAGGAGGTAATGAGCTCATCTCTGGTGACTGATGGCACTGTGGCCACGGAGGAAAGCAAGATAAAGGTACTCTGGGCTCTGAGGGAGCGGATAACAGAAGCCCTGAGACATGACGGCTACACTTACAAGTACGACATCTCACTGCCTGTGGAGAAGATCTATCAGCTAGTGGAGGACATGAGGGGACACCTGGGCATCAGGGCAAAAAGTGTGGTTGGCTATGGACACGTGGgtgaTGGTAACCTGCACTTGAATATCGTCTCTCCCACTTACGACCCAGCTCTGCTGTCTGCTATTGAACCCTATGTCTATGAGTGGACTGCAAAGCATCATGGGAGTATTAGTGCTGAGCATGGACTCGGTCTGAAGAAAAGGAACTACATTCACTACAGCAAGCCGCCTGAGGCTGTGGCGGTCATGAGGAACATTAAAGCTATGCTGGACCCAAAAGGAATCCTCAACCCTTACAAAACTCTGCCAGATGCTATACCCTCACATGTACCCTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K18204 D2HGDH; D-2-hydroxyglutarate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68375 lncRNA downstream 106262 26407583 ~ 26407864 (-) True G54706
TU68366 lncRNA downstream 263269 26250546 ~ 26250857 (-) True G54697
TU68350 lncRNA downstream 423341 26090379 ~ 26090785 (-) True G54682
TU68271 lncRNA downstream 982561 25529829 ~ 25531565 (-) False AMCG00009105
TU68269 lncRNA downstream 990101 25522121 ~ 25524025 (-) True G54613
TU68408 lncRNA upstream 9105 26529239 ~ 26532315 (-) False AMCG00009121
TU68409 lncRNA upstream 9105 26529239 ~ 26532315 (-) True AMCG00009121
TU68478 lncRNA upstream 106672 26626806 ~ 26649993 (-) True G54792
TU68489 lncRNA upstream 158116 26678250 ~ 26678588 (-) True G54797
TU68544 lncRNA upstream 329079 26849213 ~ 26852408 (-) True G54841
AMCG00009120 mRNA downstream 19853 26490877 ~ 26494273 (-) True AMCG00009120
AMCG00009118 mRNA downstream 30425 26474679 ~ 26483701 (-) True AMCG00009118
AMCG00009114 mRNA downstream 453470 26059541 ~ 26060656 (-) True AMCG00009114
AMCG00009113 mRNA downstream 564124 25942125 ~ 25950002 (-) True AMCG00009113
AMCG00009112 mRNA downstream 582631 25887411 ~ 25931495 (-) True AMCG00009112
AMCG00009121 mRNA upstream 2499 26522633 ~ 26532410 (-) False AMCG00009121
AMCG00009124 mRNA upstream 95795 26615929 ~ 26624943 (-) True AMCG00009124
AMCG00009125 mRNA upstream 110478 26630612 ~ 26635364 (-) True AMCG00009125
AMCG00009126 mRNA upstream 135031 26655165 ~ 26673239 (-) True AMCG00009126
AMCG00009127 mRNA upstream 254415 26774549 ~ 26777467 (-) True AMCG00009127
TU68195 other downstream 1337748 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 1357788 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 4330561 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 6250041 20200747 ~ 20264085 (-) True G53809
TU68523 other upstream 273407 26793541 ~ 26796654 (-) True G54821
TU68783 other upstream 1093464 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 2538150 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 3140826 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 3729737 30249871 ~ 30254483 (-) True AMCG00009241

Expression Profile