RNA id: AMCG00009134


Basic Information

Item Value
RNA id AMCG00009134
length 2018
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00009134
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26835528 ~ 26839792 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACCACACACAAGCTCACACAACACATACAGAGACTCGTACTTTGAGCTGCTGTTACATGCTCCTGTTCAGGACAGTTTGGATATTGAAGTAGTGCTGGGATTAAAAACTTTGGATTACAGAATCCATATTTAGTTTTGAGAATGTGTATTGCTCGCTGTACCCGATGTCTGGGCATTACCTTGGTGCCTCTGGCTGTGGTGTCCATGCTGGCCAACACCCTCCTGTTGTTCCCAGACCTACAGATACAATACCTGTTGGAAGGGCATGTCACCAAGTATGCCATCTGGGTGCCAGGGCTGTGGGCATCGGGCTTCTTGGTTCTTCTAGTTGCCAGGGCATTCATATCAAGTGGCTCTAAGAAAGATTGCTGTGGATTCAGGAGTGAAATGCTGTGTTCTTTCATGTATGTGGCAATAGCCGTGGCGGGTGCCTCCTTCTGTTTTCTGATGAGTGGCACTGGGCTGGCAGAGGGTCCGCTCTGCAAGTTCAACGTCACCCTCAGCAACGGCAACCAGAGCCAGGTGTGGGGCACACCGCTGGAGCTCAAGAACAGCAGAGACAAAAGCTACCTGTTTGATCAGAGCCGCTGGGAGGGGGTCTGTGAGGAGCCGCGGGGCGTGGTGCTGTGGAACATGGTCCTGTTCTCCGTGCTCATGGCCAGCAGTGGCCTGCAGGCTGTAATCTGTGCTGTCCAGGCCATCAACGCTGTGCTTGGACTTGTGTGTGGGCCAGGCTTCCGCAAAAACAAGGTTGGCCCAATGTGACTACAGCCTCCCTGAGCAAAAGAAGCACAAAAACAGCACCTTGAATAGAGAATGCTCCAGACCAGATGGGAGCCAACATTCAGGTCATTCTCTGGCTGTGGGGGCAAGCCTGttcatggttttcttttgttttgtgtatgaaaagcaggtttgtgttttttgagtGCTGGCAAAATGCACTGTGGATACTGATGTGCAATATAGATTCACAGGGCTGGAACCTTCACTGTGGGAGAGGAAGTGCTCAAGTATTTCTATAGGGGGTTCCTAGCTGTGGCCTCACCCCAAGAAATGGGTGCCTGCCACCAAATCTTCACATCATGGCTAATTAAATGACCAGTGATCTCTTTCCTTGTGCATCCTAAACTCTAGTAGCATTCTCACACAGAtggttgattttaaatgcacacagGCTGCTGTTGGCCATAGCCTACACCAGAACAAAGGAAACAACATAGGAAATGATTATAGTTTGGCTTCTGCACTAACCCAGGCTCTGGGGCTACTCTGGCTCCCTCCCACCTCTtacctatttattattttgcattatcaCAATTGGCAGATCCAAATGGAGACAGACAGTTGCAGATTCATGCCAAAACCCAATAATCTCCCAGCCCAGGTTGCTcccattattacatttctttaaacaatCAATTCACCATTCTTACATGTTCAATTCCACTCAAGTATCATGTTAAATTGCCATAATGTATGTTGATGTCTGGTATCATTCCAAGAAATGTGGACATATCCCCTTTCTTAAGAGGTGTTGACTGTCAAATTTACAATGCTGTCAGTCTTTGTTCACAGCATTCAtaacaaaataagcaatttctataaatgtaaataactgttcAGTGTGTAGCTGAATTAATTACTTAAGAACAAATACCCctttcttaaataaatgaacatctTCTTGAGCTAGGATTGTGGTGAAGAGAAGAACTACACCATTCTAAGGGTAAAATGTGATAAAGCAGTGATATGGGTTCTTATAGCAGTTCATTGCATATgtgttttcaaatatgtaaaaaaatggaaactgaagaaaaaaaaagggctGTATACATTTGCTCTTATAACCATGTATACTTCCTTTTTCCAAATGAGCTACCTCCATAATTGATCTTTTCTGCTTTTGTTAATGTGTTAAATACATTGTCAATTAAAACATGTCAATGTCATAGGTGTTTTTCTGAAAGCATGTACAGGTAactgacttaaaaataaaaacatttgtttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68489 lncRNA downstream 156940 26678250 ~ 26678588 (-) True G54797
TU68478 lncRNA downstream 185535 26626806 ~ 26649993 (-) True G54792
TU68408 lncRNA downstream 303213 26529239 ~ 26532315 (-) False AMCG00009121
TU68409 lncRNA downstream 303213 26529239 ~ 26532315 (-) True AMCG00009121
TU68375 lncRNA downstream 427664 26407583 ~ 26407864 (-) True G54706
TU68544 lncRNA upstream 9421 26849213 ~ 26852408 (-) True G54841
TU68593 lncRNA upstream 138315 26978107 ~ 26979245 (-) True G54886
TU68620 lncRNA upstream 186747 27026539 ~ 27033024 (-) True G54911
TU68623 lncRNA upstream 193360 27033152 ~ 27034216 (-) True G54914
TU68653 lncRNA upstream 272690 27112482 ~ 27114486 (-) False AMCG00009148
AMCG00009132 mRNA downstream 8514 26823526 ~ 26827014 (-) True AMCG00009132
AMCG00009136 mRNA downstream 21059 26810895 ~ 26814469 (-) True AMCG00009136
AMCG00009137 mRNA downstream 45897 26788878 ~ 26789631 (-) True AMCG00009137
AMCG00009131 mRNA downstream 47063 26787018 ~ 26788465 (-) True AMCG00009131
AMCG00009127 mRNA downstream 58061 26774549 ~ 26777467 (-) True AMCG00009127
AMCG00009135 mRNA upstream 12687 26852479 ~ 26860729 (-) True AMCG00009135
AMCG00009133 mRNA upstream 21466 26861258 ~ 26866165 (-) True AMCG00009133
AMCG00009142 mRNA upstream 27926 26867718 ~ 26878879 (-) True AMCG00009142
AMCG00009141 mRNA upstream 52479 26892271 ~ 26897656 (-) True AMCG00009141
AMCG00009143 mRNA upstream 66738 26906530 ~ 26917479 (-) True AMCG00009143
TU68523 other downstream 38874 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 1659150 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 1679190 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 4651963 22183088 ~ 22183565 (-) True G54003
TU67291 other downstream 6571443 20252904 ~ 20264085 (-) False G53809
TU68783 other upstream 773806 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 2218492 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 2821168 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 3410079 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 3762787 30602579 ~ 30657612 (-) False AMCG00009265

Expression Profile