RNA id: AMCG00009141


Basic Information

Item Value
RNA id AMCG00009141
length 1005
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00009141
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26892271 ~ 26897656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGTTGACAGACGGGGTGAGTCTGAGGAGTCCGGGGATGACGAGGCGAAGAGGAAGGGTTTCAATGGGGAGCCGGACTCCCAGCAGCCCCCTTTGCCAGTGAAGGAGGAGTCCCCAGTTGACATGGACACAATAACCCTTGACCCTGATGAGGAGGATGTGGATTTGGTTCACTGTCGAATTGGGAAAATTGAAGGCCTGGAGGTTCTACAGAAAGCCAAGACCCTGTCCCTGCGGCAGAACCTCATCAAGCAGATTGAGAACCTGGAGCAACTCAGCTCTCTAAGGGAGCTGGACCTCTACGACAACCAGGTCCGGAAGCTGGAGAATCTGCAGGACCTGACAGAGCTGGAGGTCCTGGATGTTTCCTTCAACGTCCTGCGGAAGGTGGAGGGCCTGGAGCGATTGACTCGGCTGCGGAAGCTCTTCCTGCTGCACAACAAGATCAGCCACATTGAGAATGTGGGTCACCTGAGCAGCCTGGAGATGCTGGAGCTGGGATCCAATCGCATCAGGaGCATTGAGAACCTGGACTCTCTCTCCCAGCTGGACAGCCTGTTCCTGGGGACCAACAAGATCACTAAGCTGCAGAACCTGGATGGGCTGCACAACCTCACTGTGCTCAGCATTCAGAGTAATCGCATCACCAAGATGGAGGGGCTGCAAGGACTTATCAACTTGCGGGAGCTGTACCTCAGCCAAAACGGCATCGAGGTCATCGAGGGGCTGGAGAGCAATAAAAAGCTGACAACCCTGGACATCGCCTCCAACAGGATAAAGAGGATCGAGAACATCAGCCATCTGACGGAGCTGCAGGAATTCTGGATGAACGACAACCAGATCGAGAACTGGGGGGACCTGGATGAGCTGAAAAATGCACGGAAGCTGGAGACGGTGTACCTGGAGCGCAACCCCCTGCAGAAGGACCCACAGTACCGCCGCAAGATCATGCTGGCGCTGCCCAGTGTGCGGCAGATAGACGCCACCTTCATCCGCTTCTGA

Function

GO: NA

KEGG:

id description
K17550 PPP1R7, SDS22; protein phosphatase 1 regulatory subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68544 lncRNA downstream 39863 26849213 ~ 26852408 (-) True G54841
TU68489 lncRNA downstream 213683 26678250 ~ 26678588 (-) True G54797
TU68478 lncRNA downstream 242278 26626806 ~ 26649993 (-) True G54792
TU68408 lncRNA downstream 359956 26529239 ~ 26532315 (-) False AMCG00009121
TU68593 lncRNA upstream 80451 26978107 ~ 26979245 (-) True G54886
TU68620 lncRNA upstream 128883 27026539 ~ 27033024 (-) True G54911
TU68623 lncRNA upstream 135496 27033152 ~ 27034216 (-) True G54914
TU68653 lncRNA upstream 214826 27112482 ~ 27114486 (-) False AMCG00009148
TU68666 lncRNA upstream 416661 27314317 ~ 27316727 (-) False AMCG00009151
AMCG00009142 mRNA downstream 13392 26867718 ~ 26878879 (-) True AMCG00009142
AMCG00009133 mRNA downstream 26106 26861258 ~ 26866165 (-) True AMCG00009133
AMCG00009135 mRNA downstream 31542 26852479 ~ 26860729 (-) True AMCG00009135
AMCG00009134 mRNA downstream 52479 26835528 ~ 26839792 (-) True AMCG00009134
AMCG00009132 mRNA downstream 65257 26823526 ~ 26827014 (-) True AMCG00009132
AMCG00009143 mRNA upstream 8874 26906530 ~ 26917479 (-) True AMCG00009143
AMCG00009148 mRNA upstream 213340 27110996 ~ 27153475 (-) True AMCG00009148
AMCG00009149 mRNA upstream 271752 27169408 ~ 27200307 (-) True AMCG00009149
AMCG00009151 mRNA upstream 416774 27314430 ~ 27335731 (-) True AMCG00009151
AMCG00009158 mRNA upstream 579863 27477519 ~ 27490312 (-) True AMCG00009158
TU68523 other downstream 95617 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 1715893 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 1735933 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 4708706 22183088 ~ 22183565 (-) True G54003
TU67291 other downstream 6628186 20252904 ~ 20264085 (-) False G53809
TU68783 other upstream 715942 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 2160628 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 2763304 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 3352215 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 3704923 30602579 ~ 30657612 (-) False AMCG00009265

Expression Profile