RNA id: AMCG00009146


Basic Information

Item Value
RNA id AMCG00009146
length 3264
RNA type mRNA
GC content 0.57
exon number 22
gene id AMCG00009146
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27037329 ~ 27058960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTATTGTGCCCCGTGCCTTGGTTGCGTGGCACAGTTGTCACGCTACAGCCCTCAGCTCGGTATAAAAGAGGACAGTGAGACCGTTCCTGCAGCAACAGCCATGTGGTCACTCCTGAGCTTGACCTTGTGCCTCACTTACCTCTCTCTATCCCTGACTGTGACTGTTCCCTTCCCAGAGGAGGAGCGGCAGCCACAGTTCTGGTTTGATCTGGCCCAGCGGCGTGTCCAGAGCAGCCTGTCCCGGCGAGACTCCACCACCACTGCCAGGAACCTGCTGCTCTTCATTGGGGATGGAATGGGCATGAGCACTATCACTGCCACTCGCATCCTGAAGGGCCAGCTCAGGGGTGGCAGTGGGGAGGAGTTCACTCTGGCTATGGACACCTTCCCTTACACTGCGCTCTCCAAGACGTACTGCACCGACTCTCAGATCGCAGACAGCACCTGCGCCGCCACGGCCTTCCTGTGTGGCGTGAAGACCAACAAGTTCATAGCCGGCCTGAGCGCCGCAGCTACCTTTGAGCTCTGTAACTCCACTGCGGGAAACCAGGTCACCTCCGTGCTGCGCTGGGCCAAGGAGGCAGGTAAATCAGTAGGTTTTGTAACCACCACGCGGGTACAGCACGCCACACTGGCCCCTGCCTATGCCCACACGGCAAGCCGCAACTGGTACAGCGACGCCGACATGCCAGCTGAGCAGAGACAGCAGGGCTGCACTGACATCGCTCACCAACTCGTCCACAACATCCCTGACATAGAGGTCATAATGGGGGGCGGCCGCAAGTACATGACCCCTGCTGCGACCCCTGACCCCGAGTATAATGGTGACGCCCGTTACCAAGGCCTGCGATTAGATGGGGTCAATCTGATTGACAAGTGGAGAGAGCTGAAACCTGGGAAGAATGCTTCTTATGTGTGGAACAAAGCGGATCTAGACAGAGTGGACCCAAACAAGACTGACTATCTTTTAGAGGACCTGTCCTATGAACTGGAGAGGAACAGCAGCTCAGACCCCTCCCTGCCCGACATGGTGGACATTGCGCTCAAGATCCTGGGCAAGAACCCCAAAGGATTCTTCATGCTCGTGGAGGGTGGAAAGATTGACGTGGGTCATCACGATGGAAAAGCCAAGCTGGCCCTGTACGAGACAATGCTATTGGACGAGGCTGTGGAACGTGCAGCTCTGCTGACAAATGAGAGAGACACTCTGACCGTGGTGTCAGCTGACCACTCCCACACGCTCAGCCTGGGAGGCTACACTGACCGGGGGACCCCAATCTTTGGCTTTGCCCCCGTGGTGAGTGACGTGGATGGGAAACCCTACACTTCTCTGACCTATGGGAACGGTCCTGGCTTCAGTCTGGCCAATGGCAGTCGGGCCAATCCTCAACTGAAGAACACCAGTGACCCCAACTACAGGCAGCAAAGTGCAGTGCCCCTTCGCCAGGAGACGCACAGTGGGGAGGATGTGCCAGTGTTTGCCCGTGGGCCCTGGGCACACCTCTTTCGGGGGACCAATGAGGACACCTTCATTGCCCATGTTCTGGCCTACGCTGCCTGTCTGGGACCCCACACCGCCCGCTGCAACCAGGACATCAAGGTGCCAGCCTTGGCCCCCATGCCCAGCTGGCCCTCTGTCAGCGCCTCGCCCCACCGGGCCACTCCTGCAGTTTGGACACCGGTCATTGCTCTGGTCCTGTTGTGTGCAGGACTGACCCTCAACGAGAGGATGGCATCTTACAGATACTGTGTCTTGTGTCTGTGCCTGCTGGCCAGTCTGCCTGCTGCAAAAACAGCTGCCCCAGtggaggaggaggacccTGCGTTCTGGAGGAAGCAGGCCCAGCAGACGCTCCGCTCTGCTCTCAGCCTTCGGCACAATACCAACGTGGCCAAAAACATCATCCTCTTCCTCGGAGATGGAATGGGCGTCACCACAATAACAGCAGCCCGGATTCTAAAGGGACAGCTGCAGAACAAGACTGGGGAGGAGACTGTGATGGCCATGGACACCTTCCCATATGTGGGTCTGGCCAAGACCTACAGTGTGGACTTCCAGATTGCAGACAGCTCCAGCACGGGCACGGCCTACCTGTGTGGGGTGAAGTCCAACCTCAACACCGTAGGCCTGAGCGCTGCAGGCCGGAATGGGATTTGCCGCTCCGAGAAGGGGAATGAGTCTGTGGGAATTGTGACGACAACACGCGTCCAGCACGCCACCCCTGCATCAGCCTACGCCCACAGTGCCTACCGCAAGTGGTACTCAGACTCGGATATGCCAGCAATCGCCAAGCAGCAGGGATGTAAGGACATCGCCCACCAGCTGGTTTACAACACAGACATCGATGTGATCATAGGAGGAGGTCGGAAGTACATGACCCCCCAAGGCACCAAGGACCCAGAGTACCCCTCTGACCTGAAGGCACGGGGCAAACGTGGGGACGGTCGTGATCTGATCTCCGAGTGGCAGAAGAGCAAAGCTGGGAAGGTTGCTCACTACGTCTGGAATAAGTCAGACTTTGATGCTGTCAACCCCAACACTACAGATTATCTGATGGCTCTGTTTGAACCTGGGGACTTGAGgtttgagatggagagagaccCTGCCATGGACCCCTCCATTGTAGAGACAATGGAGAAGGCCATCCAGATCCTACAGAAAAATCCCAAGGGCTTCTTCTTACTGGTGGAAGGCGGGCGTATTGACCAGGGTCACCACGCGGCCCGTGCTGCCATGGCACTGCACGAGACTGTGGCACTGGACATGGCGGTCTCACGGGCACTGGAGCTCGTCAGTGATgatgacacactcacactcgtCACTGGGGATCACTCTCACTCCTTCAACTTCAATGGATACCCCTTCAGAGGAAGCCCCATCCTTGGAAAATCCCCTCTGTTTGGAGACGATTTCTTACCATATACTACGCTAATGTATGGGAATGGCCCCGGATATAAAATCATGAACAACAAGCGGCCTGACATCAGAGGAGTAGACACAGacactgagacacacggAGGGGAGGATGTGGCAATGATGGCACGTGGACCCATGGCGCACCTCTTCCACGGCATCCAGGAGCAGAACTACATCGCCCATGCTCTAGCATACGCAGCCTGCATTGGGGAGAACCAAGACCACTGCCTCACCTCCGCCACCTCCACAAAGCATGTCACAGGCAATGCTGCCCCTTCCATTTATATCCACCTCATCGTACAGCTATTCCTGGGGCTACTGCTCACTGCCTACCTACACTGA

Function

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K01077 E3.1.3.1, phoA, phoB; alkaline phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68587 lncRNA upstream 53172 26982843 ~ 26984157 (+) True G54880
TU68536 lncRNA upstream 186326 26849222 ~ 26851003 (+) True G54833
TU68512 lncRNA upstream 212400 26822296 ~ 26824929 (+) True G54812
TU68500 lncRNA upstream 222837 26810651 ~ 26814492 (+) True G54806
TU68641 lncRNA downstream 37577 27096537 ~ 27096773 (+) True G54928
TU68649 lncRNA downstream 51920 27110880 ~ 27117923 (+) True G54936
TU68661 lncRNA downstream 254995 27313955 ~ 27317157 (+) True G54948
TU68662 lncRNA downstream 260808 27319768 ~ 27319971 (+) True G54949
TU68663 lncRNA downstream 262989 27321949 ~ 27322190 (+) True G54950
AMCG00009145 mRNA upstream 4372 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009140 mRNA upstream 55478 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009139 mRNA upstream 134057 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009130 mRNA upstream 200912 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009138 mRNA upstream 235480 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009144 mRNA downstream 18854 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009147 mRNA downstream 43536 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009150 mRNA downstream 305345 27364305 ~ 27377706 (+) True AMCG00009150
AMCG00009154 mRNA downstream 325808 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009153 mRNA downstream 344328 27403288 ~ 27416448 (+) True AMCG00009153
TU68288 other upstream 1449719 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2119466 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2220795 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3061423 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5743428 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 554623 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1707494 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1869932 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2044680 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2044680 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile