RNA id: AMCG00009149


Basic Information

Item Value
RNA id AMCG00009149
length 1236
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00009149
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27169408 ~ 27200307 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGGGTGGGAAGCTGGGAATGTTTTCTTGTCTCacctgtcctcctcctcctctcctgcagtCTGCACAGTGCGATGCCAGAAGTTCCTGATCTCCCGGGTGGGTGAAGACTGGATCTTCCTCATCCTGCTGGGGCTCCTCATGGCGCTGGTCAGCTGGGTAGTTGACTTTGCCATCGCCATCTGTTTGCAAGCACAGAAGTGGATGTACGGGGGACTGGACAGTAACGTGTTCCTGCAGTACCTGGCGTGGGTCACCTATCCCGTCGTTCTCATCACCTTCTCAGCCGGGTTCACGCAGATCCTCGCCCCTCAGGCTGTCGGCTCAGGTATCCCAGAGATGAAGACGATCCTGCGAGGGGTGGTGCTTAAGGAATACCTCACCTTCAAAACCTTCGTGGCCAAAGTGATCGGCCTGACCTGCGCACTGGGCAGCGGCATGCCCCTGGGCAAGGAGGGCCCGTTTGTGCACATTGCCAGCCTGTGTGCAGCTCTGTTGAGCAAGTTCATGTCTCTCTTTGGAGGTATCTATGAGAACGAGTCCCGGAACATTGAGATGCTGGCGGCAGCGTGTGCAGTGGGCGTGGGCTGCTGCTTTGCTGCCCCCATCGGAGGTGTCCTCTTCAGTATAGAAGTAACCTCAACCTTCTTCGCTGTCAGGAACTACTGGAGAGGATTCTTCGCAGCCACCTTCAGTGCCTTCATCTTCAGAGTGCTGGCTGTGTGGAACAGGGATGAAGAAACCATCACTGCCCTGTTTAAAACGCGCTTCCGTCTTGACTTCCCCTTTGACCTGCAGGAGCTCCCAGCCTTCGCAGTGATTGGAATCGCAAGTGGTTTTGGAGGTGCGCTCTTTGTTTACTTAAATAGGCTTATTGTCCAATTCATGAGGAAACAAAAAGCCATCAACAAGTTTTTGATGAAGAAgCGTCTTTTATACCCTGCCTTGGTGACCCTCCTTGTTTCTACCCTGACCTTTCCCCCTGGCTTAGGCCAATTTATGGCTGGAAAGCTGACACAGAAGGAGTCTCTGGTGACGCTGCTGGATAACCGCACCTGGGCCAAGCAGGGCATTGCGGAAGAGTTCGACTACATCGGGAACGCGCAGGCCTGGAAACACCCACAGATCAACGTCTTCGTCACCCTCGTCCTTTTCATCGTCATGAAGGTCATTCGAAATGAGAAGCAGTCATTATCCCTGCTGTGCCTGAGATGTGATGACCACGAGTTCTGA

Function

GO: NA

KEGG:

id description
K05011 CLCN2; chloride channel 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68653 lncRNA downstream 54922 27112482 ~ 27114486 (-) False AMCG00009148
TU68623 lncRNA downstream 135192 27033152 ~ 27034216 (-) True G54914
TU68620 lncRNA downstream 136384 27026539 ~ 27033024 (-) True G54911
TU68593 lncRNA downstream 190163 26978107 ~ 26979245 (-) True G54886
TU68544 lncRNA downstream 317000 26849213 ~ 26852408 (-) True G54841
TU68666 lncRNA upstream 114010 27314317 ~ 27316727 (-) False AMCG00009151
TU68693 lncRNA upstream 220511 27420818 ~ 27422678 (-) True G54978
TU68748 lncRNA upstream 325379 27525686 ~ 27525979 (-) True G55025
TU68749 lncRNA upstream 325740 27526047 ~ 27527494 (-) True G55026
TU68913 lncRNA upstream 670695 27871002 ~ 27871261 (-) True G55153
AMCG00009148 mRNA downstream 15933 27110996 ~ 27153475 (-) True AMCG00009148
AMCG00009143 mRNA downstream 251929 26906530 ~ 26917479 (-) True AMCG00009143
AMCG00009141 mRNA downstream 271752 26892271 ~ 26897656 (-) True AMCG00009141
AMCG00009142 mRNA downstream 290529 26867718 ~ 26878879 (-) True AMCG00009142
AMCG00009133 mRNA downstream 303243 26861258 ~ 26866165 (-) True AMCG00009133
AMCG00009151 mRNA upstream 114123 27314430 ~ 27335731 (-) True AMCG00009151
AMCG00009158 mRNA upstream 277212 27477519 ~ 27490312 (-) True AMCG00009158
AMCG00009155 mRNA upstream 295496 27495803 ~ 27503596 (-) True AMCG00009155
AMCG00009160 mRNA upstream 307721 27508028 ~ 27516925 (-) True AMCG00009160
AMCG00009156 mRNA upstream 317202 27517509 ~ 27522991 (-) True AMCG00009156
TU68523 other downstream 372754 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 1993030 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 2013070 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 4985843 22183088 ~ 22183565 (-) True G54003
TU67291 other downstream 6905323 20252904 ~ 20264085 (-) False G53809
TU68783 other upstream 413291 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 1857977 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 2460653 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 3049564 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 3402272 30602579 ~ 30657612 (-) False AMCG00009265

Expression Profile