RNA id: AMCG00009150


Basic Information

Item Value
RNA id AMCG00009150
length 2756
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00009150
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27364305 ~ 27377706 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGCAGTGCGCTGGAATGCCACGCAACAGGATCCTCTTAATTTGGGCAttgatcatatttttttctttaacatccAAGACAACCTGAACTCAGATACACGACAAAAATCCATGTTGAAGCCTGAGGAGATAATCCACTTCAAATGAAACGTGTCAGTGGCGGGGCTTGGAGACATTGCGCCCGGATCTGCCCCGCACTCTTTCTGCCGAGGGTTTAAATGGAAACCGGACGAGAGAATGGGGACTGTGCCGCTGTGAGGGTCTTTCTGCACCGGAGAGCGGGTTATGGAGTTAAGCAGATTGGTGTTATTGCTACTTGTCATGACAGTTGTTGAAGTGCGAGACACACAGAGCAGCAATATTGACTACGTATGCAACCCTCGAGTCAGAGATCAACAGATTCAGAAAGTGAACGATCTCAGGAGTGTGATGATTGTGTGCAGTGCGGCAGCTCTCCtgcccagtccagtccagttgcCATTTGTGGGAGTCCGCAAGGAAACCTGGAAGAAGAAATCCATGCAGGTGAAGAGGGCTGAGATCGTGTCTGAGCTGCGTATGTTCTCAGAGTCCATAGAGAGCATGAGGGAAGGGAACCAGTCTGACTGCCTGTCCATTCTGCTGGACCGGCTGTCTCATAGCATCACCAACCACATCCTCATCATCACCAATCTGCAGCTACCGGGGGAGAAAGTGAATCAGGACAGACCAGACTCTGCCAGGAGCACCCAGAAACTGCAAGATGTGCAGAAGACTTACAGCAACCTCCTGAAAGGCAAGATGGAGAGCTTCTTAAAGGAGCTAGAAGAAGACTTCTGTGAAGGGAGAGCCGATGACTCTTGACCCCAGACAGGACTTTACCTGGGTTTCAGAGTTTTCCTGGAGCTGCTGGTTCTCCGTTCCATCTAATGTGGGCTGGGCCTGAACCCCTGAAGAGGAGACTTTATGACAGCACTTCAATTAAGTTGGGATACTgagctttgcattttgtatataGCACATCCCAGAGCACTGGAAAACAGAATACTAAAAGCTACAGAAACTCATCCAGACACATATCTACTGTGCTCTGTATGTTGATCTCAGTACCCCCACAAGAATGGCCTTGGTTTTATTGAGCTGGCATCCTCCCCAAAAACAAGCACTTTTTAGAAGCACTGCTTCTTTAAACATGATGAACTTCCCTGTAGGCCTGCTACATTCctgtggaaatgctgctctcTCCTGGCCAAGGATTGGAAGACTTCACTGAGCTCAAGGATGAAGGCAGGGCAAAAAGACCTGGAACAGAAGGACTGGCACATAAGTAAAGAAGTACTGCAGTTTTCCATAAGATGCCACTATATAAATATGGATTCTATTTATATCACAAACTATAAGCTAAATGagataaaactaaaaactttaGATGCCATAAAATGACAATCTGGGAACCTAGCTGCTAAGGATCTACCATCCACAGCTCTTGCTCTTAATGTTTTCCACTGGATGTCATTGCAGATTGCTGCCAATCATGCACTGATGGCAAGCTCAAAACTCCCACTCCCACGTTGCAGAGTTAGAGGGCAGTGCCTGGGACACAGCGATTATTTGATTGACATGGTATGAGGGGTGTCGAGCAATGACCTAAGAACATACCAGTTCTGGGCATGTGATACCCAGCATTGATCTGGAAATATACTAATCCTAACCATTGAACCAACTATCCGTGACCAAAGAATGCACTGATTCTGGGCTTAGAAGAACTGCATTGACTTGTATTATCTAtgctatattataatatactgaCTGGTACAGGACAGCTGTCACCCACCTGTGCTGAAGAATACAGCGATGCCCCTGagatattgtaaatgttttatttttttatttaatgtttgaattatttttaactgcCTTCCCCTCGAACATTTATAATATGTGTATAATAAACTCTCAGACTATATGTAttccagtaaaacaaaatgtcaaaatgttcaTATATGCTGCATTAATAATTGATGATCTGTGTTGGGATGTAATGGATTACTGGTATGGTCATAGTAACGCAATTACCATAATCAGATTAGAAACCATCAGTATTCATTTGTTTACTCATGCTAAAATCTGTAACACAGTTATGATAATAATGGGCATCATCTGACAGGTTACTTCTTGAAATTTCTTGACTCTGTACAGATAGGCTAAGATCTCTAGCTGGTGGTTTAAAAAGTCAGGAGGTCACAGATCATTTTATAATGATGTGGCGCTATTCCTGTTGagggaaaatactttttttaactCACAAGTCCAATACAGCAGTTAATTACACATATTCCAGTGTGTGTAGATTAGAGAGAATTTTCTCAATTGTTTATTCTTCTGAAAAATATACTGGAACTTCAACTGGATGCCAACATgacatattttctttccattagaCCGCCTTTGTTCTCGTCAACTTGTTTATGAATGTACGACATGCGTTGTGTTTGTGAATTTGCAATTTGAACTGTGATGTTTTTGAAGtgcttatttttatgtttctatttgtttggtgccttaaaacaaatactaataaaTTGGATGATTAATAGATTTTTCTAACTGTGATCTTATCTGCGATAAAGTCCTTGTTTTTTAACACCTGTGCAAGAACATGACAGTTATGCTTTAAAGGAAAACTGTTGACTGGCATCATTGAGTAGACACAAGTAGCAACTTTTCAAGCACacatataatttgcatttacttCATTTAGGATTCTCATCtgaaaa

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68664 lncRNA upstream 41510 27322540 ~ 27322795 (+) True G54951
TU68663 lncRNA upstream 42115 27321949 ~ 27322190 (+) True G54950
TU68662 lncRNA upstream 44334 27319768 ~ 27319971 (+) True G54949
TU68661 lncRNA upstream 47148 27313955 ~ 27317157 (+) True G54948
TU68649 lncRNA upstream 246382 27110880 ~ 27117923 (+) True G54936
TU68684 lncRNA downstream 42823 27420529 ~ 27422675 (+) True G54969
TU68713 lncRNA downstream 148361 27526067 ~ 27527494 (+) True G54997
TU68786 lncRNA downstream 245810 27623516 ~ 27626011 (+) True AMCG00009164
TU68950 lncRNA downstream 947653 28325359 ~ 28325659 (+) True G55184
TU68975 lncRNA downstream 1001809 28379515 ~ 28380370 (+) True G55202
AMCG00009147 mRNA upstream 259414 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009144 mRNA upstream 276447 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009146 mRNA upstream 305345 27037329 ~ 27058960 (+) True AMCG00009146
AMCG00009145 mRNA upstream 331348 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009140 mRNA upstream 382454 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009154 mRNA downstream 7062 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009153 mRNA downstream 25582 27403288 ~ 27416448 (+) True AMCG00009153
AMCG00009152 mRNA downstream 83524 27461230 ~ 27477658 (+) True AMCG00009152
AMCG00009162 mRNA downstream 115695 27493401 ~ 27494525 (+) True AMCG00009162
AMCG00009164 mRNA downstream 236549 27614255 ~ 27624432 (+) False AMCG00009164
TU68288 other upstream 1776695 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2446442 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2547771 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3388399 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 6070404 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 235877 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1388748 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1551186 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 1725934 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1725934 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile