RNA id: AMCG00009151


Basic Information

Item Value
RNA id AMCG00009151
length 5788
RNA type mRNA
GC content 0.51
exon number 22
gene id AMCG00009151
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27314317 ~ 27335731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccatcctAAACGTTTTACTTGGGCGCTTCAATTCCTGTCAGCACTTGGCTCTGACCGGGTCTCTCATCCAGGACACATATTATTagtcttatttaattttgaatgtggaACTGAGGAGTAGTACCATTCATCACTTCGTTTTTGTAacgagagaagaaaaaaaaaaaggaaggaaaagagaaaaagagaagaaagagaaagtttCCAGTGAAGGCGAGCGGAGCAGCCAGCGTGTGTTTGGATGCTGTGCGAGTTGCAGGGATGAAGAGTTGCAGCTCGGCCGTTAtcctgtgtctctgtatctgcGCCGGGCTGGAGTCCGGCCATGCTTTAAGACTCAAGTCCCCAGCGCTGCCCATCCAGTCCGAGAGAGAGCCTGGCCCCTCCAAGGGAATCTCAGGTTGCTCTTTCGGAGGGAGATTCTACTCGCTGGAGGACACATGGCACCCGGACCTGGGAGAGCCCTTCGGAGTGATGCACTGTGTGATCTGCCACTGCGAACCAGTGCAGCAAAGAAACCGAAGGGGGAAGGTGTTTGGAAAGGTGAGCTGCAGAAACATCAAGCAGGATTGTCCCGAACCAAACTGCAGGGACCCCGTCCTGCTGCCTGGACACTGCTGTAAGAGCTGCCCTAAAGCTCGCCTGCCTATGCTGGACAAGAAAGGAGCGGAGTCGGTGTTTGAAGGCTTCGAATACTTACAAGAGAAGGATGATCTCCACAAAACCTACAATGACCGTTCCTATCTGAGCACTGAGGATATCTCCCCAGGGGACAGCAGGACAGAATTCGTGGCGCTCCTGACCAGCCCTGTGGACTCTTGGTCCATCGGTTCCAGCGGGGTGGCCCGTGCCAGGTTCACTCTGTCGCGCTCCAGCATGGTCTTCTCCATCACCTTCGAAAGGATAGCACGCCCGACCCACGTTCAATTCTTGGACAGAGATGGCAACACCTTGTTTGAATACAAAGTACCGAGGACCATGTCTCCAGACAGCAACATGGTGTGCGGGGTGTGGAAGAGCCTGTCCAAGTCTCATGTCCGGCAGCTGCGATTGGAGCACCTGCATGTCTCCATGGTGACGGTAGGCAGCCAGAGGGAGGAGGTCCAGGGCAAGATCATCAAACACAGAGCTCTGTTTGCAGaAACCTTCAGCTCCACGCTGACATCAGAGGAGGAGCATTCTGGGATAGGGGGCATTGCCATGCTGACCCTGAGTGACACAGAGAACAACCTGCACTTCATCCTGCTGTTCGAGGGCCTGCTGGATAGGAGAGAGCGAGAGCATACCCTTGTGCCCATCCGGGTTCAACTGCGGTACCGCCAACATGTGCTGAGAGAGATCCGAGCCAACGTCACAGCCCATGACCCTGATTTCGCAGAGGTTCTGACGGACCTCAACAGCCGTGAACTGTACTGGCTGTCCCGCGGACAGCTGGAGATCGCTGTGGAGACAGAGGACAAGGACCCACGCCGCATCTCCGGGTTCATCAGTGGGAGGAAGTCCTGTGACACTATCCAGAGCGTGCTGTCCAGTGGAGAAGCTCTGACTCCTGGTAAGACAGGTGGAGTGGGCTCAGCTATCTTCACCCTCCATGACAACGGCACACTGGACTACCTGGTGCAGGTGGTGGGCGTGTCCGGTAAGGTGGTCGGCGTGACGATCGAGACAAAGCCGCGGCGGAGGAGCAAACGCACTGTTCTGCATGACCTGAGCGGAGAGTACCACGATGGCCGCGCCACTGGGACCTGGGTCCATCTGGAGGCGCGCCACATCCACATGCTGCTGCAGAACGAGCTCTTTATCAATGTGGCCACGGAAGACCACCAGGAGGGGGAGCTGCGGGGGCAGATAACCTCCCTGCTGTACAGTGGGCTGGATGCCAGGAGGCATGAGGTCCCAGTGCCCCTGGCTGGCCAGATGGTGTCACCCCCCGTACAGACCAGTGCTGGTGGACATGCCTGGGTGTGGGTGGACGAGCGATGCCATCTGCACTACGAGATCGTTGCGGCCGGGCTGAGCAAGACTGACGACGTCACCATCAACGCCCACCTACATGGCTTCGCAGAGATCGGGGAGCTGGAGGACAGCAGCCCCACTCACAAGAGGCTCCTCATGGGCTTCTACGGTTCCCAGGCACAGGGTGTACTCAGAGACCTCAGTATGGAACTCCTACAACATCTGGACAGAGGGACAGCTTTCATCCAGGTCAGCACCAAGATCAACCCCAAGGGAGAGATCCGAGGACGGGTTCATGTGCCCAACAGCTGCGACTCTGCACCTGGTCTGGACCTGGGGGAGGAGGAGTTTGATGACGGTCCATACCAGGCGGCCCGGAGAGACCCCGAGACGCTGAGGAAAGACCCCAACACATGCTTTTTCGAGGGGCAATACAGAGCACATGGTTTGAGTTGGACCCCGGAATACAACAACTGCTTCACCTGCATCTGTCAGaAGCGCACTGTGATTTGCGATCCCATCATCTGTCCAGTCTTGACCTGTACACGCACCATTCAGCCAGAGGATCAATGCTGCCCAGTATGTGATGAAAGGACAGAACCACAGGCTGTCAAAAGCTTGGATAAATCAGAAGAACATCCTGAAGGCTGCTATTTTGAAGGAGATCAGAAAATGCACGCCCCTGGTACCACCTGGCATCCCTTCGTCCCCCCTTTCGGGTACATCAAGTGTGCCATCTGTACATGCAAGGGAGCCACGGGAGAGGTGCATTGTGAGAAGGTCACCTGCCCAGCACTCACCTGCAGTAAGCCAATCAGACGCAATCTGGCCGACTGCTGCAAAGAGTGCCCAGaggaggagaaggatCCCCTGGAGCACACGGACATGATGCAGGCCGACGGCACAAGCCACTGCAAGTTTGGGAAGAACTACTACCAGAACAGCGACAACTGGCACCCCCACGTGCCTCTCTTTGGGGAGATGAAGTGCATTACCTGCTGGTGTGATCATGGTGTTACCAAGTGCCAGAGGAAGCAGTGCCCCATTCTGACCTGCAGCAACATCatcaggagagagagcaagtgTTGTCCAGAATGCCAAGATGTGAACTCAAAGGAAGATGAGGAGCCACTGAAATCGCCCGAGAAGAAGCGCAACTGGAGATATTAACCACCCTGAGGTCCCCTGCTGTCTTTCACCCAGGATTGGCCACAGACTGCACGCTGGCCTGCTCCCCACACTCACACTTTGGATTTGTAATGAAACAAAGCAGAGtgaaagatagagagagagagagagagagagggggggggggagaaagcACCAGAACGGCAAAGAGGGAACTTGTAAGACACCAATGAAATATGTGCTTTGGACACGGGAGGGAATTTATACTCTGCATACTGCACATAAGAAGGAGGACAATACCTATTGCTTtaattcttttttaatttccttgcctttttatgttattttatttaactttgacTCTGAAGACTGCGGGTGTCACCTAccacctgcacacagacagacaactgCCTTCCTATCTGCATCTTCTAATTTAatgaccaaaaaacattttcatcaacGGTTTCTACCACCCATCACTTCTTAAAACATCCAACTCCTGCCTGCTGTCACCTTGATGTCCAGTATCAACATGTCTTCCTTTGAACGCCTGGCTGAAAGACATCCCAGGAAATGTACATTCTTTACAATTCAAGTCCCGAAAATCAATGCTCTGGGAATTGTTTCCAGCAATGACAGAGGAGTGGATTGAAAACCTGTCCCACTGCTGTGAAAGACTCCCTGCCAGCCCACTGCAAATATTCAGCTCGGATAACTTAGCCTGGCTCATTTGGCTCCACTTGGGAAGCGTGGGATCAGCACAGTTCCCCTCTTATAATGTGGTTTTGAATGAGCCAAGCATGCTTAGTGTGCCTATTGCTTAAACCATCCCCTACAGACAGGTTTTGATGCTGGGACCCTTCAAAGGAAGTTCTGCCCGGCTGTTTTCTTGCTCTACAGCTGGGAAAGACCTCTTTTCTGCGGACGGCTGTGATTCACTGGGTGCCTCTGTTTGGGTACTGGGGGCAGGGCCAGTTTTGGGGGCAAAGCAGAGTACACATACAGAGGAAAGACCACCCAAATCTGATATGGGAATGTTTTGGTCAAGCAATCACATAATTTTTCTCCATGACCTCAGACAAGGAAAATCTGGTCCATTGTGATTCAAGGTATTTCCTTTAACATTTTTCTGAGAATGGAAATTGCATAAAGAGACCGAACTGAGGGGATGATGGGGGATTTATTGTCTATCCTAACAATGCCTGGATTCTTCCCCTATCATGGCAGAAAAGGTGTTCAGGTTTGCCCTCAGTTTCTCAGTAATCAAATGAATGAACACTTGAGTTAACGTTAAGTGAATTGTACCTAAACCCCCACTTAGCTATAATCTTTGTGTTAAACCACAAAGATTCCCATTCTGTTTTACATAGACTTTTATTAAAGCCACAGAGTTCTTTAAAGGATCTTAAAATGGTATAATAAAGGGGATCTGTTGAAGTGCAAATGAGCCTTAATGATTGTCAGTGTTATTGTGGTGCTAATGTACAAAGCAGCTGAACTGACAGTCTTTAAACGCAACTCTGTGAGCCATTTAGGTTTAGCTTCCTCTACTCTCTCTTTTAAAACAAGAGGTACAGGGTAAACCAAAAACTATTTTCCATACGGTTTGGATGTCCGTCTTTGTACTATTTTTTATTCATGGGAACtttttagtaaaacaaaaaagtaaaggcTATTTCTCGCACAGACGTCAGGATATTTCTGTGCATGAAAGCAGACTGGGACCCATTATGGGAAGGACAGCTTCTTGTATGTTGTAAACCACACGCCATATAACCTTCAAACCATCTTCAGACACCTGCTCTGCAGAGCCAGGCTGATCAGTCTCCCAGCACAGTGTACAGGGGGGCTTTGCTTTAGCCATCCCACCCCAGGGATCCCCTGCAAAGGGAAGAGGAAATGACTGGACATCCAGGAGGGCAGAGGAGTGAGAGTAAAAGAGAGCAGGGCTGGAGGCgggtgtgtatgtggggggggtAATGGATTTGACAGATTTGTACACACACAGGATGGatttgtaaatatgtgtgtgtgtgtgtgtgtgtgtgtgctgccttTCATATGCATTGTGTTACTGGCCTGCTGCAGAGAAAAGAGTGACAGTGGGTCCTTTTTGATGCCCCTCCTCTTTCTTCCCCATTTCCCCAGTGGGGTCCGCAGAACTGGTGGTGGTCTTTGTGTTGCAGTAAAAGGATGCCCATGCTGTGCTGTAAACAGCCAGGGATCCTGTTGCCATGGGGACTGGTAGACCACCTGTATAGTGTGAGTGGGGGGTGTATCTGGTTTGGAGACAATGCAGGGTCTTTGTAGAGCAGCTCAACTACAGGGGCAAACATGGACACTAGATCACCAGGTTTGCTTTGACTTTTGGTGCACATCTGTCCAGTTAAAGGCCACTGCGCGTAGGTCACTCTGTGCCTCGATCAAAGTATTCATCCCTCTGAATCATGTGTCATGAGTGGGTTTCATTTAAAGCGGGTTAGACATGTAGCTGGGTAATTGTAAgggttttaaatggaaattgtCATGAGCTGCCCTCCGGATCCAGTCAATCCTACTCTCTCTCTAAGGTACGCTGGACTCTGTTTGCACAGGGTCAGAGCATGGCATTGCAGGGTCCCTACAAACTAGTGTGTGCCAGGTTCctttcatttctgtattttttcagcaacattttctgtcttattattgtattttttttat

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG:

id description
K04657 CHRD; chordin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68653 lncRNA downstream 199944 27112482 ~ 27114486 (-) False AMCG00009148
TU68623 lncRNA downstream 280214 27033152 ~ 27034216 (-) True G54914
TU68620 lncRNA downstream 281406 27026539 ~ 27033024 (-) True G54911
TU68593 lncRNA downstream 335185 26978107 ~ 26979245 (-) True G54886
TU68544 lncRNA downstream 462022 26849213 ~ 26852408 (-) True G54841
TU68693 lncRNA upstream 85087 27420818 ~ 27422678 (-) True G54978
TU68748 lncRNA upstream 189955 27525686 ~ 27525979 (-) True G55025
TU68749 lncRNA upstream 190316 27526047 ~ 27527494 (-) True G55026
TU68913 lncRNA upstream 535271 27871002 ~ 27871261 (-) True G55153
TU68988 lncRNA upstream 1049352 28385083 ~ 28387604 (-) False AMCG00009186
AMCG00009149 mRNA downstream 114123 27169408 ~ 27200307 (-) True AMCG00009149
AMCG00009148 mRNA downstream 160955 27110996 ~ 27153475 (-) True AMCG00009148
AMCG00009143 mRNA downstream 396951 26906530 ~ 26917479 (-) True AMCG00009143
AMCG00009141 mRNA downstream 416774 26892271 ~ 26897656 (-) True AMCG00009141
AMCG00009142 mRNA downstream 435551 26867718 ~ 26878879 (-) True AMCG00009142
AMCG00009158 mRNA upstream 141788 27477519 ~ 27490312 (-) True AMCG00009158
AMCG00009155 mRNA upstream 160072 27495803 ~ 27503596 (-) True AMCG00009155
AMCG00009160 mRNA upstream 172297 27508028 ~ 27516925 (-) True AMCG00009160
AMCG00009156 mRNA upstream 181778 27517509 ~ 27522991 (-) True AMCG00009156
AMCG00009159 mRNA upstream 192526 27528257 ~ 27540565 (-) True AMCG00009159
TU68523 other downstream 517776 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 2138052 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 2158092 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 5130865 22183088 ~ 22183565 (-) True G54003
TU67291 other downstream 7050345 20252904 ~ 20264085 (-) False G53809
TU68783 other upstream 277867 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 1722553 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 2325229 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 2914140 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 3266848 30602579 ~ 30657612 (-) False AMCG00009265

Expression Profile