RNA id: TU68666


Basic Information

Item Value
RNA id TU68666
length 2411
lncRNA type sense_over
GC content 0.43
exon number 1
gene id AMCG00009151
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27314317 ~ 27335731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aactgCCTTCCTATCTGCATCTTCTAATTTAatgaccaaaaaacattttcatcaacGGTTTCTACCACCCATCACTTCTTAAAACATCCAACTCCTGCCTGCTGTCACCTTGATGTCCAGTATCAACATGTCTTCCTTTGAACGCCTGGCTGAAAGACATCCCAGGAAATGTACATTCTTTACAATTCAAGTCCCGAAAATCAATGCTCTGGGAATTGTTTCCAGCAATGACAGAGGAGTGGATTGAAAACCTGTCCCACTGCTGTGAAAGACTCCCTGCCAGCCCACTGCAAATATTCAGCTCGGATAACTTAGCCTGGCTCATTTGGCTCCACTTGGGAAGCGTGGGATCAGCACAGTTCCCCTCTTATAATGTGGTTTTGAATGAGCCAAGCATGCTTAGTGTGCCTATTGCTTAAACCATCCCCTACAGACAGGTTTTGATGCTGGGACCCTTCAAAGGAAGTTCTGCCCGGCTGTTTTCTTGCTCTACAGCTGGGAAAGACCTCTTTTCTGCGGACGGCTGTGATTCACTGGGTGCCTCTGTTTGGGTACTGGGGGCAGGGCCAGTTTTGGGGGCAAAGCAGAGTACACATACAGAGGAAAGACCACCCAAATCTGATATGGGAATGTTTTGGTCAAGCAATCACATAATTTTTCTCCATGACCTCAGACAAGGAAAATCTGGTCCATTGTGATTCAAGGTATTTCCTTTAACATTTTTCTGAGAATGGAAATTGCATAAAGAGACCGAACTGAGGGGATGATGGGGGATTTATTGTCTATCCTAACAATGCCTGGATTCTTCCCCTATCATGGCAGAAAAGGTGTTCAGGTTTGCCCTCAGTTTCTCAGTAATCAAATGAATGAACACTTGAGTTAACGTTAAGTGAATTGTACCTAAACCCCCACTTAGCTATAATCTTTGTGTTAAACCACAAAGATTCCCATTCTGTTTTACATAGACTTTTATTAAAGCCACAGAGTTCTTTAAAGGATCTTAAAATGGTATAATAAAGGGGATCTGTTGAAGTGCAAATGAGCCTTAATGATTGTCAGTGTTATTGTGGTGCTAATGTACAAAGCAGCTGAACTGACAGTCTTTAAACGCAACTCTGTGAGCCATTTAGGTTTAGCTTCCTCTACTCTCTCTTTTAAAACAAGAGGTACAGGGTAAACCAAAAACTATTTTCCATACGGTTTGGATGTCCGTCTTTGTACTATTTTTTATTCATGGGAACtttttagtaaaacaaaaaagtaaaggcTATTTCTCGCACAGACGTCAGGATATTTCTGTGCATGAAAGCAGACTGGGACCCATTATGGGAAGGACAGCTTCTTGTATGTTGTAAACCACACGCCATATAACCTTCAAACCATCTTCAGACACCTGCTCTGCAGAGCCAGGCTGATCAGTCTCCCAGCACAGTGTACAGGGGGGCTTTGCTTTAGCCATCCCACCCCAGGGATCCCCTGCAAAGGGAAGAGGAAATGACTGGACATCCAGGAGGGCAGAGGAGTGAGAGTAAAAGAGAGCAGGGCTGGAGGCgggtgtgtatgtggggggggtAATGGATTTGACAGATTTGTACACACACAGGATGGatttgtaaatatgtgtgtgtgtgtgtgtgtgtgtgtgctgccttTCATATGCATTGTGTTACTGGCCTGCTGCAGAGAAAAGAGTGACAGTGGGTCCTTTTTGATGCCCCTCCTCTTTCTTCCCCATTTCCCCAGTGGGGTCCGCAGAACTGGTGGTGGTCTTTGTGTTGCAGTAAAAGGATGCCCATGCTGTGCTGTAAACAGCCAGGGATCCTGTTGCCATGGGGACTGGTAGACCACCTGTATAGTGTGAGTGGGGGGTGTATCTGGTTTGGAGACAATGCAGGGTCTTTGTAGAGCAGCTCAACTACAGGGGCAAACATGGACACTAGATCACCAGGTTTGCTTTGACTTTTGGTGCACATCTGTCCAGTTAAAGGCCACTGCGCGTAGGTCACTCTGTGCCTCGATCAAAGTATTCATCCCTCTGAATCATGTGTCATGAGTGGGTTTCATTTAAAGCGGGTTAGACATGTAGCTGGGTAATTGTAAgggttttaaatggaaattgtCATGAGCTGCCCTCCGGATCCAGTCAATCCTACTCTCTCTCTAAGGTACGCTGGACTCTGTTTGCACAGGGTCAGAGCATGGCATTGCAGGGTCCCTACAAACTAGTGTGTGCCAGGTTCctttcatttctgtattttttcagcaacattttctgtcttattattgtattttttttatttgtattattgttattgttattatttttataattattattattattattattattattattattattatgaataataattagttttctttttttgtatttattgaatgtgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68653 lncRNA downstream 199831 27112482 ~ 27114486 (-) False AMCG00009148
TU68623 lncRNA downstream 280101 27033152 ~ 27034216 (-) True G54914
TU68620 lncRNA downstream 281293 27026539 ~ 27033024 (-) True G54911
TU68593 lncRNA downstream 335072 26978107 ~ 26979245 (-) True G54886
TU68544 lncRNA downstream 461909 26849213 ~ 26852408 (-) True G54841
TU68693 lncRNA upstream 104091 27420818 ~ 27422678 (-) True G54978
TU68748 lncRNA upstream 208959 27525686 ~ 27525979 (-) True G55025
TU68749 lncRNA upstream 209320 27526047 ~ 27527494 (-) True G55026
TU68913 lncRNA upstream 554275 27871002 ~ 27871261 (-) True G55153
TU68988 lncRNA upstream 1068356 28385083 ~ 28387604 (-) False AMCG00009186
AMCG00009149 mRNA downstream 114010 27169408 ~ 27200307 (-) True AMCG00009149
AMCG00009148 mRNA downstream 160842 27110996 ~ 27153475 (-) True AMCG00009148
AMCG00009143 mRNA downstream 396838 26906530 ~ 26917479 (-) True AMCG00009143
AMCG00009141 mRNA downstream 416661 26892271 ~ 26897656 (-) True AMCG00009141
AMCG00009142 mRNA downstream 435438 26867718 ~ 26878879 (-) True AMCG00009142
AMCG00009158 mRNA upstream 160792 27477519 ~ 27490312 (-) True AMCG00009158
AMCG00009155 mRNA upstream 179076 27495803 ~ 27503596 (-) True AMCG00009155
AMCG00009160 mRNA upstream 191301 27508028 ~ 27516925 (-) True AMCG00009160
AMCG00009156 mRNA upstream 200782 27517509 ~ 27522991 (-) True AMCG00009156
AMCG00009159 mRNA upstream 211530 27528257 ~ 27540565 (-) True AMCG00009159
TU68523 other downstream 517663 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 2137939 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 2157979 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 5130752 22183088 ~ 22183565 (-) True G54003
TU67291 other downstream 7050232 20252904 ~ 20264085 (-) False G53809
TU68783 other upstream 296871 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 1741557 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 2344233 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 2933144 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 3285852 30602579 ~ 30657612 (-) False AMCG00009265

Expression Profile