RNA id: TU68775



Basic Information


Item Value
RNA id TU68775
length 1191
RNA type TUCP
GC content 0.46
exon number 3
gene id AMCG00009164
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27613583 ~ 27626011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTTCCAGGTCTTTATCCCCATAATGAAAGAATAAGGTTACAAACGCAGAAAAACAATGGACACATTCAGTGTGGACCAGTCTTTTATTGTATGTACACAACAGCACCACATTACACCCGCGATGGATACAGCatctgaaagaagaaaaataaataagtcagaAACCTGTGGAAGTTCAGCATGCTGCTGCAGTCGGTCAAAATGAGTGGGGAACTTACACAAATGACACATGAGCACTGTAAAGAACTAAACTTCACGTTACTACAATTTTAAAGCTGAGCCTGGCAAGGGCTGACAGCCTCTCAACAGTATAGATTATTTCCATCACTGCAACATGTAGCTCTCAGgctctgcattctgttgttgccctgcttcttgttgtttaacaaacCTTGCTGTGTTGCATCTTTTATcaagaggttattcattcataaatctATGTAGTTGGTCATTTAAATGTCTCGTTAATCAGTCACAATCTGATAAATCTGATAAAGAAGGAAAGGACTGTCTTCTCTCTTGCATACAACCAATGTAACAATGAGACTGAGACTATGAGGGAACTTCCCTGTCAGGCTGGAACTGTGTACGGTGACCTGACAGATGGTGAGAGACAGGTGTGGATGGAGAGAGAAGGGTGAAAGACACTCACCACTCTGATCCTGTGCCCAATGGCCTTGGCGGGCAGGTTGCTGGTGAACTTGGCACGGACCATTCCACTGCTTCCGTGGGCTCGCATCACCTTGCCCCAGATCACACGTGTCTTATTGGGCTTGCCACCAGGCGTCACAGTGTTCTCTTGGCCTTGTAGACGTAGGCACATCGCTTGCCCAGGTAGAACTCGGTCTCCTCGCGAGTGTACACACCCTCGACCTTCAGCAGCGCCGTGTGCTCACGCTGGTTACGCAGCCCACGCTTGTACCCGGAGAAGATCGCCTTGCACCACAgtCTGGCATTGTGAAAAGAGTGTCCAGGCACAGCCAAACCTGCAGGTGGGAGAGGACAGGTCAGTAGTGAGGGGAGTCCAGAGCAATAAaagatacatttccatttagACACACAACACCAGGATAGCATGAAGCTCAATGTACAATCTCATAAGATAATGCTcacataaaacaatgaaaaacaaagggaTTAATTGCCCAATTTGATATAGACTCAATTGTTTATATACATGGGGATTCTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68713 lncRNA upstream 86089 27526067 ~ 27527494 (+) True G54997
TU68684 lncRNA upstream 190908 27420529 ~ 27422675 (+) True G54969
TU68664 lncRNA upstream 290788 27322540 ~ 27322795 (+) True G54951
TU68663 lncRNA upstream 291393 27321949 ~ 27322190 (+) True G54950
TU68662 lncRNA upstream 293612 27319768 ~ 27319971 (+) True G54949
TU68786 lncRNA downstream 6138 27623516 ~ 27626011 (+) True AMCG00009164
TU68950 lncRNA downstream 707981 28325359 ~ 28325659 (+) True G55184
TU68975 lncRNA downstream 762137 28379515 ~ 28380370 (+) True G55202
TU68976 lncRNA downstream 763014 28380392 ~ 28380755 (+) True G55203
TU68977 lncRNA downstream 763602 28380980 ~ 28381299 (+) True G55204
AMCG00009162 mRNA upstream 119058 27493401 ~ 27494525 (+) True AMCG00009162
AMCG00009152 mRNA upstream 135925 27461230 ~ 27477658 (+) True AMCG00009152
AMCG00009153 mRNA upstream 197135 27403288 ~ 27416448 (+) True AMCG00009153
AMCG00009154 mRNA upstream 224281 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009150 mRNA upstream 235877 27364305 ~ 27377706 (+) True AMCG00009150
AMCG00009163 mRNA downstream 43257 27660635 ~ 27671005 (+) True AMCG00009163
AMCG00009170 mRNA downstream 70507 27687885 ~ 27696664 (+) True AMCG00009170
AMCG00009169 mRNA downstream 115177 27732555 ~ 27733810 (+) True AMCG00009169
AMCG00009173 mRNA downstream 139845 27757223 ~ 27768167 (+) True AMCG00009173
AMCG00009175 mRNA downstream 225155 27842533 ~ 27860126 (+) True AMCG00009175
TU68288 other upstream 2025973 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2695720 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2797049 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3637677 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 6319682 21292241 ~ 21293901 (+) True G53917
TU69158 other downstream 1149076 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1311514 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 1486262 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1486262 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 1555761 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile