RNA id: AMCG00009191


Basic Information

Item Value
RNA id AMCG00009191
length 1830
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00009191
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28619193 ~ 28627169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTATTTCATTTCGTTTGTTTCAACATGCCTGGCGAATTGGTTTGAAAGTGTGCTTCCTTTAATGACAGGTCCATTCGCTGGTCATTTTAAATCCATAATgatttttcagttatttgtcTAACCGTATATGTCGCTTGTTTGTCTGATGTGGGGCATATATGTGGATTAcgtattttatacatatatatataaaatatgaaggCCAGTGACGACATCTGTCCTTGCCAGCACAGGTGTGTCCCCCATGTCTCTGTCTGCCACATCACTACATTTCAGGTCAAGTGATGCACGTCAACGTAATGTCATCTACCCTCACCTACGACACACTGCGCTTTGGAGAGTTTGAAGATTTTCCTGAGACTGCAGAGCCAGTGTGGATTCTGGGGAGGGAGTTCAGTGCTCTTTCAGagaAAGATGAGATTCTGTCTGATATTACCTCACGCCTTTGGTTCACGTACAGAAAGAATTTTCAGCCTATTGGTGGAACAGGCCCTACTTCTGACACAGGCTGGGGTTGCATGCTGCGATGTGGGCAGATGATCCTAGGAGAGGCCCTGGTGTTCATGCATCTAGGTCGAGACTGGAGGTGGGTAAAAGGCCAGCAGCAGAAAGAGGAATACTTCAGCATTCTCAATGCCTTCATTGACAAAAAAGACAGCTATTATTCCATACATCAGATTGCCCAGATGGGAGTCGGGGAGGGGAAGTCCATTGGCCAGTGGTATGGACCAAACACGGTTGCACAGGTTCTAAAGAAGCTGTCTGTATTTGATTCATGGAGTCGACTGGCACTGCATATAGCCATGGACAACACCGTGGTCATTGAGGAGATCAAGCGTCTGTGCATGCCCTGGCTGGACTTTGTTGGAGCAGCGTCAGCCTACCGTGGGGCAGAGGGGGGGCGGGAGCTGAACGGCTGTGTGGGGGGAGCCTGTGCCCTGGGGGTGGAGGACACCGTGCTCTGGAAGCCCCTGGTACTGCTGATACCCCTGCGGCTGGGGCTGAGTGACATCAACGAGGCCTACATAGAGACACTGAAGCAATGCTTCATGCTCCCCCAGTCTCTAGGAGTCATTGGTGGGAAACCCAACAGTGCCCACTACTTCATTGGCTATGTAGGAGAGGAGCTGATTTACCTAGACCCTCACACCACCCAGCCTGCAGTGGAGCCCAGCGATGACGGGCAGGTCCCCGATGACACCTAccactgtcagcaccccccctgCCGCATGCACATCCGTGAGCTGGACCCCTCCATTGCCGTGGGTTTCTTCTGCCGCACAGAGGACGACTTTGACGACTGGTGTATGCGCATTCGAAAGTTGTCTGGAAGCAGGGAAGGGCTGCCAATGTTTGAACTGGTGGATAGTCAGCCATCCCATTTCACCAGCTCGGACGTCCTTAACCTCACTCCAGATTTTTCAGATTCTGACCGGCTGGAGCGGTTTTTTGACTCGGAGGATGAGGAGTTTGAGATCCTGTCATTGTGAGGAGGGAGCCGGGGGTCCATCACAAAGACAAGAGGGGCACCTTCAGGCAGAGGACGGGGAAGGGAGAACACATAGACACCTCCCTCAGGCCAGCCTAGCAACCATGGCATAGTCATCCTGCCTCACTCTGGACACAGCTGCCACCCATCAGTGACAAACTGTGCTCTACATTTATATCCACTACCAagactttcctttttttttttttttgaaggaaGGTGTTTTGTGGGGGGCGGATCTGCCaagatttttttgttgatttaatttggattaTGTTTACaatttgcacatttattataatttttgtttagatttttgttaaatatatatatatatata

Function

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69038 lncRNA upstream 153967 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 235690 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 237894 28380980 ~ 28381299 (+) True G55204
TU68976 lncRNA upstream 238438 28380392 ~ 28380755 (+) True G55203
TU68975 lncRNA upstream 238823 28379515 ~ 28380370 (+) True G55202
TU69101 lncRNA downstream 494 28627663 ~ 28630297 (+) True G55300
TU69110 lncRNA downstream 5186 28632355 ~ 28633332 (+) True G55308
TU69185 lncRNA downstream 270807 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 402149 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 557752 29184921 ~ 29185184 (+) True G55461
AMCG00009187 mRNA upstream 8607 28599918 ~ 28610586 (+) True AMCG00009187
AMCG00009192 mRNA upstream 22743 28593147 ~ 28596450 (+) True AMCG00009192
AMCG00009190 mRNA upstream 55085 28544328 ~ 28564108 (+) True AMCG00009190
AMCG00009189 mRNA upstream 103342 28510563 ~ 28515851 (+) True AMCG00009189
AMCG00009188 mRNA upstream 113397 28489056 ~ 28505796 (+) True AMCG00009188
AMCG00009199 mRNA downstream 49428 28676597 ~ 28723790 (+) True AMCG00009199
AMCG00009201 mRNA downstream 102227 28729396 ~ 28735853 (+) True AMCG00009201
AMCG00009200 mRNA downstream 109114 28736283 ~ 28755174 (+) True AMCG00009200
AMCG00009198 mRNA downstream 129386 28756555 ~ 28762518 (+) True AMCG00009198
AMCG00009204 mRNA downstream 140453 28767622 ~ 28799600 (+) True AMCG00009204
TU68775 other upstream 1001815 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3031583 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3701330 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3802659 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4643287 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 139285 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 301723 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 476471 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 476471 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 545970 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile