RNA id: AMCG00009198


Basic Information

Item Value
RNA id AMCG00009198
length 2592
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00009198
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28756555 ~ 28762518 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAAAATAGCGGGGAGAAAGGCAAGCACACTGTGTCGAAATGACTCGGCACAAGTTTACTACATGTTGCCAATTCCCAAGTTTTATATCAACCACGTTTTGGCCTCCTGAAATTGTTTCCCTAAGATGTGAAGCTGGTTCCAGCCATCGCACAGGAAAATACTAACAAGCTCAGCTGTGAGGCCCTGGTCactgaaaagataaaaaagaatTGGAGTGAAGGAAAGACCATGGTGCGCAATGTGGACGACCTGGACTTCTGTATGTCATCTCACCCGCAGAGCATCCTGGAGGGGCTGCGCTCCCTGTGCTCACACCCCAAACTATTTGACGTGACCTTGAGCATAGGGGGGCGAGAGTTCCCCTGCCACCGCAGTGTCCTGGCCCTCTGCAGTCTGTACTTCCGCTCCATGTTCTCAGGGGACTTCGTGGAGAGCATCTCTGCTCGTGTGGAACTGCAGGACGTGGACCCCGATGTCCTGGCCACTCTATTGGACTTTGCCTACACTGGCAAACTCACTATCAACCAGGGTAACGTAGAGGGCCTGATTAGCACCTCCAGCCAGCTGCAGTTTGCGGCTGTGCGTGCCGTTTGCAGCCGCTACCTCCAGCACCAGATCGACGCCACCAACTGTCTGGGCATCCTGGAGTTCGGCGAGACACATGGCTGCCCAGAGGTGGTGGCGAAGGCCAGGGGCTTCCTCCTGGAGAACTTTGAGGCTGTGGCTCAGGGAGAGGAGTTCCAGCTACTACAACTAGATCGGCTGATGGCCTTCCTCTCTGATGACAGGCTCCAAACACGGGACGAGCGCAGCCGGGTGGAAGCGGCTCTCTCCTGGGTGAAGTGCGACGAGGCTTCCCGTGCCCAACACCTCCCTAAGCTGATGAGCCTGGCACGACTCTCTCTCCTGCCCCGGGAGTATCTCACTGACACCTTGCTTAAGGACAGCCTGGTCATGGGGTCTTCAAGCTGCAGGGAGGCTATAGAGAGGATCCACAGGGAAATGGAGTCGGACCCAGGAGTGTTGATGCAGAGCGGCTCCCATAGTCCTCAGCCCAACCTACAGGAGGTGCTCTTTGTAATCGGAGGGTGCTCGCTGGACGACTCTGACGACGATGACgaggaggaagagcagcagcagccgaGGCCAGTTCACAGGAACACTGCCTTCTATTCCACAAGGACCAGACAGTGGAATCTCCTCCCAGATTTCCCAGACTACAATAAATGGGGCTATTCTGTAGTTTCCTTGAACAATGATGTGTACATCACAGGGGGCTCAAGAGGCTCACGCACCAACACCTGGTCAACCACCCAGACCTGGAGGTACATCACGCAAGAGGGGAAGTGGGTCACAGTTGCTCCCATGCTGAGGCCCAGAACCAATCACTGCTCGGCTGTGCTGAACGGGGAGATATACGTCATTGGAGGCACGACTCTGGATTACGTGGAGGTGGAGCACTACGACCCCTACAGTGACAGCTGGTCTCTCACTGGCCCCACCCTGAAATATGTCACCAACTTCACGGCGACCGCCTGCATGGGAAAACTGTACGTCATTGGTTCTTGTGCAGTCAAGTACAATGTTCTCACCTTGCAGTGTTACAACCCAGTAATAGATGGCTGGAGTATCATTGCCTCTCCTTTCATCCCTAAGTACCTGTCATCCCCTCGCTCAGTCGCCCTGGATGGCCTTATCTATCTGATTGGGGACAACACCAAGAAGGTGTATACATATGACTCTGAGGCCAACATGTGGCAGAAGGTCCAGCTACTTCACACTCTCCATGAGAACGGGAGCATGGTGGTGCTGGGTGGACAGCTGTACGTGACGGGTGGGCACTGGAAGGGTATGGATGGGGAGTACCGAGTGGAGGTGGAGGTTTACAACTGTGCCTCCAATGCCTGGCACATAGAGAGTTTGTTGCCAAGACTTTGGTCTTACAGTGGCTCCTGCTCCATCTTTCTCGACCCCTCTCAGTGGACCGAGCCCTTCCCTCTTGATGAGACCTAGGGGACCTGCCCATCGTGGCCGAAGCTCTGCAGAGCGTCTTAGGCCGGAGTCTAGACTGGTCAGCGCACAGACATTGATTCACATTAGGCCAAATGTACCGCCCACTCTTTCAgatttgttgatgttgttacaggtaaaacaaacactaaaaaacACTGTCAGTACTGTTAAACGTTGCAGTCATGAATTTGTATATATCTATCTAGAAAGAGTTGACTTGTTGACAGAAAGCGAACCATTGAATGTATCCCAAAGTAAAAATTGACAGAGACACTGAACAGGTcagttttattgtaatattaacAAGCTTCCTGTAGGAAATCAGTGTTTGACCTTTTGATCAAATGAGTATGGCCTTTCTATGTAAACAAAGCATTCTGGTGTAAAagcaaataattacttttaacatAGTCACTGTCAGTATCAGGAGACAATAAAACTGCATTTAGATGCTTTGATTTTCGTTTGTGTTCATACATAGTtgatagttttatatttaatattttaatcacattatGTAATATCCATAtaatgtttcttctgttttgtttaccattaaaacaatacacttgTTATA

Function

GO: NA

KEGG:

id description
K10466 KLHL30; kelch-like protein 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69110 lncRNA upstream 123223 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 126258 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 291329 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 373052 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 375256 28380980 ~ 28381299 (+) True G55204
TU69185 lncRNA downstream 135458 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 266800 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 422403 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 424176 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 695903 29458421 ~ 29458743 (+) True G55487
AMCG00009200 mRNA upstream 1381 28736283 ~ 28755174 (+) True AMCG00009200
AMCG00009201 mRNA upstream 20702 28729396 ~ 28735853 (+) True AMCG00009201
AMCG00009199 mRNA upstream 32765 28676597 ~ 28723790 (+) True AMCG00009199
AMCG00009191 mRNA upstream 129386 28619193 ~ 28627169 (+) True AMCG00009191
AMCG00009187 mRNA upstream 145969 28599918 ~ 28610586 (+) True AMCG00009187
AMCG00009204 mRNA downstream 5104 28767622 ~ 28799600 (+) True AMCG00009204
AMCG00009205 mRNA downstream 40451 28802969 ~ 28836412 (+) True AMCG00009205
AMCG00009203 mRNA downstream 105068 28867586 ~ 28893044 (+) True AMCG00009203
AMCG00009206 mRNA downstream 147795 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009207 mRNA downstream 219811 28982329 ~ 28984320 (+) False AMCG00009207
TU68775 other upstream 1139177 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3168945 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3838692 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3940021 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4780649 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 3936 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 166374 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 341122 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 341122 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 410621 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile