RNA id: AMCG00009202


Basic Information

Item Value
RNA id AMCG00009202
length 1515
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00009202
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29014392 ~ 29019892 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTGATGTGCAGTACTGACCGCCCCAGGGACGCCGACCTGCGTTCCCAGCTCAGAATGTTCCGCACTGAAATTGCCATGGCGATCGATGACCCCTTCCCACTGCTGTACGGACTGGCCGACCACGATATCATCACCGAGCAGCTTTTTAAGGACACTCTggacaagaaaaaacatgagGGCATTCACAAAGCTGTGTATTCTTTGCTCACCCGGCTCCTGGAGAAAGAGACCCTAACCATCCAGAGCTTCtggaaaaatctatttaaagatTACAACCTGGAGAAATATCCCAAACTGCAGGTTCTCTTTTCCAGCATCCCTAAAGATGGAAGTTTAAGCAGCCTGAAGCAAGGTAAGAAGCCTCAAAGTCACAAACCAACAAACCAGTCTCGTGGACACCACAGCAAGAGGAAAAGCTCAGAAGACGTGGAGTCAGCACAGCTCTCCCACCAATCAAAGAGGCCCACCAGTCCAGgaaCTCAGACCAAAACAAAGTCTTTAAGGAAGGTTGATGGCTCTGATGTGTCGAGGATACCAGTAGGAAATGGGATTCAGGCCGTCGCCACCGCCGTCCAGAGAGCCGTCACATTGTCCTCCAGCGAGCTGCCGGTCAGTTGCGGCACTGTGGAGGAGATCCTCATCAAGCAGGTGTTTGAGTCAGGGAGCGCCAAGAAGTGCATTAAAGTAGGCAGTGAGTTTTACTCCCCTGGCAAGCTGGATGATATAGCTGGAAGAAACAAGACTAAGACTGCGAAGAGCCATAACCGCCACAAGGTGCCGCCATCCACCAGTGTCCCAGAGGTGCTGCGGAACGACGACGAGTGCGCGGTGTGTAAGGACGGAGGAGAGCTCATCTGCTGTGACGGCTGCCCCAGAGCCTTCCACCTTAGCTGTCTGGAGCCCCCACTCACCGCCATTCCCAGTGGGACTTGGCGATGCCAGTTTTGCAGTGGGAACAGAATTGAATGTGCCAGAGCCTACCAACCTGCCCAATCTGCTATAAAAAGTGCCGAAGTTTTGGAGACCGCCAGCTCCACTGTGGACATCTCgttcttctcctccctcacctccacCTCACACTCCAGTGTCACAGCAACCAAAACCAACCAGACCTCTGGCACACAGCAGCGCTCGGGCCCTGAGTTTGTGAGTCCTGGAGAAAGGTGCGGGGTGTGCCGGCTGGGCGGGGAGCTcagctgctgttctcagtgcCTCCAGAGTTTCCACCCTCGTTGTTTCTTCCCCACGTTGAGCAGTGGGAAGGCAAGATGTAAGTCATGCAGCAAGATGTGGGGGTGCACTACAGAGAATGAGTACCAGCAGCCAGTGAGCGGGGGGGTACAGgTGGTGTTAAGTGAGAACACTTCAGAGCAGAGCACTCCAGTGATGGAGCAAATCTTGAATAAGGAAGAATTGGACTCCATAATGGGAGAGAGCTCTATAGATGGGATCTTGCAGTGGGCTCTCCACAACATTTCCCGTCCCCTCTCGGAGAATCAAGGCTACTTCCAGTGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K10603 AIRE; autoimmune regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69185 lncRNA upstream 115699 28897976 ~ 28898693 (+) True G55357
TU69110 lncRNA upstream 381060 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 384095 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 549166 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 630889 28383000 ~ 28383503 (+) True G55205
TU69229 lncRNA downstream 9426 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 165029 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 166802 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 438529 29458421 ~ 29458743 (+) True G55487
TU69374 lncRNA downstream 621597 29641489 ~ 29641936 (+) True G55512
AMCG00009207 mRNA upstream 30072 28982329 ~ 28984320 (+) False AMCG00009207
AMCG00009206 mRNA upstream 87564 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009203 mRNA upstream 121348 28867586 ~ 28893044 (+) True AMCG00009203
AMCG00009205 mRNA upstream 177980 28802969 ~ 28836412 (+) True AMCG00009205
AMCG00009204 mRNA upstream 214792 28767622 ~ 28799600 (+) True AMCG00009204
AMCG00009214 mRNA downstream 55189 29075081 ~ 29102077 (+) True AMCG00009214
AMCG00009208 mRNA downstream 83716 29103608 ~ 29108227 (+) False AMCG00009208
AMCG00009220 mRNA downstream 151431 29171323 ~ 29174731 (+) False AMCG00009220
AMCG00009221 mRNA downstream 288964 29308856 ~ 29309773 (+) True AMCG00009221
AMCG00009218 mRNA downstream 346746 29366638 ~ 29402226 (+) True AMCG00009218
TU69199 other upstream 2624 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 236771 28766454 ~ 28777621 (+) False AMCG00009204
TU68775 other upstream 1397014 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3426782 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 4096529 24915029 ~ 24917863 (+) False AMCG00009088
TU69266 other downstream 83748 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 83748 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 153247 29173139 ~ 29174700 (+) True AMCG00009220
TU69455 other downstream 888019 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 975234 29995126 ~ 29995438 (+) True G55591

Expression Profile