RNA id: TU69158



Basic Information


Item Value
RNA id TU69158
length 749
RNA type TUCP
GC content 0.53
exon number 5
gene id AMCG00009204
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28766454 ~ 28799600 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAAACTTATAGTAAAAGTTAAAAGCCCAGGTAGtaagtttcttaaaaaaaacgtCACGCAGTacatgtttgctttaaaaagttAAGTGCAAGGTTCTGTTTAAGCAATGCTTGTGCCATAAAGCGTTTAATCCATTTTTCACCATCTGATGCATGCTTTATTTCTGCTGAATCCCGAGAAGCCGACGTTCTAGAACGCCCAGGACAGATTTTTCTTAAGGAGACAAAATAATCTGGGTTATTTCCCAATGAGTTCAGAAAGCGATTCGGGACTGGAGGCTGTTATCCAGAAACTGGAGGAGACCATGCTGAACCCCGACAGCAGTGGGGAGGAGACGATGCTGACAGtgcggggggagggggagcagtCCCCTGCAACTCCCCTCCCTGCCCGTATCCGCCAGATCATCACCCGCAACCTGACCGAGCAGCCGGGTGCAGGCCCTCAGGAAGGGGGTTCAGGTGACGGGCTGCAGGAGGAGAACAGGATGCTGAAGTTGCTGCTCTCCCAGGCTCACTCGGACCGAGACCAGCTGCTCTTCAAACAAAAGGCGCTGACAGCCAGGCTGGAGTCCCGTGAGCTGGAACAGGAGGCCGAGCGGCGCAGGTTTGAGGACGAAGAGGCGCCCTACAAACAGAAACTACAGGCCTACCAGGATGGTCAGCAGAGGCAGGCACAGCTGGTGCAGAAACTACAGACCAAGGTACTCCAGTACAAGAAGAGATGTGGAGAGTTGGAGCAGCAGGTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69110 lncRNA upstream 133122 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 136157 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 301228 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 382951 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 385155 28380980 ~ 28381299 (+) True G55204
TU69185 lncRNA downstream 120355 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 251697 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 407300 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 409073 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 680800 29458421 ~ 29458743 (+) True G55487
AMCG00009198 mRNA upstream 3936 28756555 ~ 28762518 (+) True AMCG00009198
AMCG00009200 mRNA upstream 11280 28736283 ~ 28755174 (+) True AMCG00009200
AMCG00009201 mRNA upstream 30601 28729396 ~ 28735853 (+) True AMCG00009201
AMCG00009199 mRNA upstream 42664 28676597 ~ 28723790 (+) True AMCG00009199
AMCG00009191 mRNA upstream 139285 28619193 ~ 28627169 (+) True AMCG00009191
AMCG00009205 mRNA downstream 25348 28802969 ~ 28836412 (+) True AMCG00009205
AMCG00009203 mRNA downstream 89965 28867586 ~ 28893044 (+) True AMCG00009203
AMCG00009206 mRNA downstream 132692 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009207 mRNA downstream 204708 28982329 ~ 28984320 (+) False AMCG00009207
AMCG00009202 mRNA downstream 236771 29014392 ~ 29019892 (+) True AMCG00009202
TU68775 other upstream 1149076 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3178844 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3848591 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3949920 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4790548 23883317 ~ 23975906 (+) True G54263
TU69199 other downstream 151271 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 326019 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 326019 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 395518 29173139 ~ 29174700 (+) True AMCG00009220
TU69455 other downstream 1130290 29907911 ~ 29911564 (+) True G55573

Expression Profile