RNA id: AMCG00009205


Basic Information

Item Value
RNA id AMCG00009205
length 7542
RNA type mRNA
GC content 0.47
exon number 31
gene id AMCG00009205
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28802969 ~ 28836412 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCTGGCAGCCCTTGTGCCCTGCCTCTGCACTTTGCTCTCCCTGGATCTGCTGACTGTGGTGGAGCTGGCCGTTCCTCTGAAGGAGTTCTACCCCTTCGGCCAGGAGCAGGGGGACTCCCAGACAATCAAGCAGGACGACGGGGGCTCTGGACTGGTGGAGATAGCTGTAGCTTTCCCCTTCTTTGGAGACAGACATACTGGGCTCTATCACCAACGCAGTGTTGTGGGTGTCGGAGACCGTTTCAAGACCTTTCCTAAGAGCCGCTTCCTCCTGCAGTGGTGGAGCGCTGAGCAAGGCCAGGGGCAGGTGAACAACAATGGGCTGGTGTCCTTCTTGAGGGAAGTGTCCCAGTTCACTCCAGTGGCATTCCCCATCGCCGGGGATCGCCGGGTCGTAGCTCCATTCTGGGCGGATGTGGATAACCGGCGGGCAGGGGAGGTCTTCTACCGTGAGAGCAAGGACCCCACTCTCCTGCAGAGAGCTACTGACGATGTGCACCGCTATTTCCCAGAGTTCCCTGCATTCAGCACCTCCTGGGTCCTGATTGCAACCTGGCATATGGTCACTTTCTTTGGGGGTAGCTCCTTCACACCGGTGAACACTTTTCAGGTGGTTCTGATCACGGACGGAGAGCTATCCTTCACCATCTTCCAGTACCACCACATCACTTGGACCACCGGCATGCATGCCAGCAGCGGGGGGGACCTGGCTGGACTGGGAGGAATTGCGGCACAGGCAGGCTTCAACGCAGGTGATGGGAGGCGCTATTTCAACATCCCAGGCTCCCGCACAGAGGACGTGGTGGACGTGGAAGAGACCACCAATGTTGGCATTCCTGGACGATGGGTCTTCCGCATCGATGACGCCCAGGTGCAGGTGGGCGGCTGCAATGACTCAGCCTCTGTGTGCCAGAACCTGCGTCCCTGTGTGAATGGAGGGCGCTGTATCGACGACTGCATCACTGGCAACCCATCCTTCACCTGCTCCTGTCTTGCAGGCTTCACTGGCAGGAGATGTCACATAGACCTTGATGAGTGTGCTGGGAATCCATGCGGAAATGGTGGGCAGTGTATCCAAGGGGCGGGCAATTTCACCTGCCTGTGTGAGCCAGGCTTCAGGGGGACAGTCTGTGAGACAGATATCAATGAGTGTGAGTCCCAGCCATGTCTGAATGGAGGCGAATGCATCGACCTGGTGAACAACTACACCTGCGTGTGCCCTGCTCCTTACAGTGGGAGGCACTGTGAAACAGATTTGTCCGAACAGACCAATTCCTCACTGAATGCGACTGAGAAACCAACagAAGTGTGTCCCTGCCAAAATGGAGGATCCTGTATAGACCCCAATGCCACCTGTGCATGCCCAGCAGGCTACACTGGAGACTTCTGCCAATTTGAGGTCACTCAGACTCCCTGCAGTACCAACAGACCCTGTCCAGATGGGGGTCCATGTTTAGAGTATGGGGGAACCTACCTGTGCACCTGCCAAACTGCTGTGGCCGAGACGGACCCCAAAGACTTATATTCCTATGTACAGCCCCGATCAGTCTGTGACTCCTCGCCCTGCTTACACGGTGGCCTGTGCTATGAGCGGGATGGGGGATATGCGTGTGAGTGCAAGCGTGGCTACCGCGGAAAACACTGTGAGAAAGTCAGGCTGAGCGTCTGCGCATCCAGCCCCTGCCGGAATGGGGGCTCCTGTCGGGAGGAAGGAGGGGGCTATCGTTGCGTCTGTCCCTATAGGTTCACTGGGAAACACTGTGAGATCGGTGAGTGCACCTCCTACTTTGCTACGCCTGATACACACTGCCTGGCATCTATGCCTCAGTTCTCTCCGAAAGCTCTTTGGTACAGCAGAAAGCCAGACCCATGCTCATCCAGCCCGTGTTTGAATGGAGGGACCTGTTTCCACTACATTGGGAAGTACAAGTGCGAGTGTGCTGAAGACTTCAGTGGGAGACACTGTGAGAATGAGCTGGACTGTGGGCCACCTATGCAGGTGAAGCATGCTGACGTCCAGTTCTCTTCAACTCAGCCCGGCTCCACTGCCCTGTACACCTGCCACACAGGATACACCCCGCTGCCCCGGGCCACACACAGCATCTGTGGCAGTCAGGGGGCCTGGAGCCAGCCCCCCGTCTGTGAGGAAATCAACGAGTGCCTGTCCCAGCCCTGCCTGAATGGTGGCACATGCCGAGATCGAGTGGCTCTCTATTTGTGTGAGTGCGAAGAAGGGTTCACTGGAGCAAGATGTGAAACAGACGTAAACGAGTGCCTGTCCGAGCCCTGTAAGCACGGGGGGAGCTGTGTGGACCAGCCAGGGTTCTACTTCTGTCACTGTCCCCGAGGCTTCACTGGCCAGGACTGTGAGACGGAGTTGGACGGATGTGAATCAAACCCTTGTTTAAATGGTGGGGTGTGTCGAGGGTACAGAGGCAGCCACCTCTGTGTGTGCCAGGAGGGTTTCATAGGAGACCGCTGTCAGACAGTGGACGACCCATGCATGATGCAACCCTGTGGGAGTAGGGGGTATTGCCGCAAGGACTGGAAAGGGAATTATATATGCACCTGTAGAGCAGGACACACTGGAAGACACTGTGAGAAAGAGCTGATGCCCCCAGCAAACTTGCGGGTAACCCGTGTAGAGGAGAATGAGGTGGAGCTACGCTGGCACTCTCCTGACAGCACCCAGGAGCTCATCAGTGGATTCGCCATCACTTATATACCCGTGGGAACAAAAGTCCGCAGAACTGACTTCCTGGACAAGCAATTCTCCACCCACCTGCTCCGGTCTCTCCTGCCCGGGCAGCTCTACAACATCTCTGTCTTCTCTGTCAAGCGCAACACCAGCAACAACAATGACATCAGTCTGCCGGCTGTCACTCTCATACGCACCCGGCCCCGCAGAGCAGAGCAGTTCCGAGTGGCCAACGTGTCCTCCTCTCAGGTGTGGCTGCAGTGGGGCTTGCCGCCCACCTGGCACTCTGCAGTCAGCCAGGTGCGTGTCTCTCTCACCCCCTCTGATGGCACTGGGCCGAGGACTGCGCTGCTCAACACCAGTGCAACACAGTACAGCTTCAGTTCACTGCAGCCAGGACCCCTCTCTCCTCAAAACCTGTCACTGGCCTTTGTCACCACGACTGCAGCTCAGATTACCTGGGACCGGCCTCCCCAAGGCTCACTAGACGGCTATGTGGTTAATGTCACACAGGGGCTCAGCACGAAGAGCCGCTATCTGCCCAATGGGAAGATAAGTGTCTACACAGTGCGAGACCTGGCTCCAGGTCAGCAGTACCtgctgtctctcactgctgtcCGCAACACCGACCACAAGCCGATTCACAGCCTGCCCCAGTTCCTTGCCATCACAACCCTGCTGTCAGAAGAGAGACCTACGAGGAGAGAGAGGCCTGGATCCGCGAGCCGAGGGTCACAGCTGAGCCGTCGAACGCCCACCCTGCAGCACCAAGTGGCACTCACTGCTGACCGCGATGCTGTGGAGGAGCTACCCAGATACACGGAGCTGATTGATGGCAGGGGGAGGATCACAGCCAGGTTCACTAACCTGCAGAAGACCATCACGCACCGTGCCAAACCTGAACCTCCAATCAAGCTGGAGAGCACAGAAGATACCACCAATAAAATGAACCTTGCATTGGAAATTCCAGAGGATGtgaccacaaaaaaaaatgAGATTACAAGGGACTGTCGGACCAACCCCTGCCAGAATGGAGGGACCTGTGTGAAGGAAGACGACTCCTTCAGCTGTGACTGCAATATGGGGTTCAAGGGCAGGCAGTGCGAACTCTtctGTCAGCGAGTTCCCCATTCCTGTACCCGCCTCTACTCTGAAACAAAGACCATCCCAGTCTGGGAGGGCGGCATCTGCCATAATTTGTACAAACGGACCTATAAAGTCCACAAGGACATTTGTTACAGGGAGATCTGTGAGCCCCTCCTGCCGAAGAACACTCCCAAAGACAGACGGACGAATAGACAGCAGTGAAACATAGgAAGCTGTTTCATCAATATACTGAGTCTCCATGGACATATTTGATTTTCCTTGATTACCCCTGACCCCTGATCCCTGAAGCCCCAACACCTGCTTCTCCTGCCAGAGCTCAGATCTCATGAGAGTCACTACGGTCCATCTGGAAAACCCGACTTCCAGACAAATTTATGGCCAGTAGATGTGAACTTTACTGTTAAAGTTTGGACATTGAGCCATATCAGAAAAGTAACCATGAATATTGGCAATCCTCACAGCCAGCCATAACTCTAGGTTAGCTTTGTTACAATGATTAGACCTATGGACTACATCAGATTCTCTGTTCTTTCTTGTTGTATTGCCAGTTTCTTGCAGGGTATGTACTCTCGTTCAAATTCTCTATCATCAGATGTGTACTGGGACATTCTCACAGATATATGCCATCATTAACTGATCTATTTTTACAAATGGTTTTATGAGGTGCAGGGTAGAAACATGGCTCCTAATACCACAGTCAACCACAGTGGGTGAGCTATAAGTTGATATAATTTGTGTCTTTTAGAAACCTATCGCTTCATATTAAAAGTCAATTTCACTGATAGATAGACATTGAAGGATTCAAGAAGGATTCCCAGTGGTCTAAAACAATCTCTAGACAGTAAAGATCCCACAATCACTCTTTTAACGTAGCCCCAGTGTCATAGTGTTACAACCTGCctacatttcagtaaaaactcATCTCATCTTGATAGTTACAGCATGGACATATTAGAGACTTAACTTAAAGTGTTGGAGGAGTTGCTCTTAAGACATAGTCCAAtatagttaataaataaataaagtcacttgaacacaacaaaaaattattgaaaaaataatagttatacataacatttgttacatttacagGGTGatcatttcacacaaaaattTAAACATGGCAATTATTAAAGTCACAATTAGACTTTCCAGAATCCCTGAGTAGATACTGGAAACATGTTGCAGCAACCTACACAGATCAATATTACAGATATTACAGGACCACTGACTAGctatttgatttcatttattttattttaattagctcTTTAGGACATCACTAGTCTCAAAAAGTACTGATAGCCTTAAAGTATGTCactttgcattcattttttaaacccaTGTGATTtggaaactaaaaacattttcacagagaCGGGCAACATAGTAAGCGAGGTTCAAATTAGCAATACATAAGGAACCCATATATATTTGACTAACCTTAATACTTTTTACATATTTGGAAAGGTTAGCGCTTATAGTttcaattgaattatttaatgtttttaaagctttctttcttgttttgtgttttttctgtggtttGCAAGCAGCAATTTTGATGCAAATCAATTATGCAAGGTTCTCACTAAAGCATAATTCAATACAGAACAATGTAATATAAGAATAGGCCAtataaatcacaatataaaCTGGCCATATTGTGAAgctgaaaatggaaatgtttaaacaatAGAATATTTGGGGTGCTTTCACTGTTGCTATTCAAAAAGCAAGATATTACTCTGTGGACACTGTCTTCCTCATTTGTTAAGAGCCAGCTGTTCCTTCTTAATAGATGCTGTTGTTTCAGCTGGTAAATGTACTGTCTGTCCTGAACATCGCAAGAACAATTCTTGTGTCCATGTTCAGTAACAATGAtttcaaacaagaaaaaagtggGGTATTGAATCGATAGTATTTGTATAATCTATTTTTTGCGGTTATACATATAATCagatttacaaaattaataaataagttttaaaggtgatctaataaaatgtgtaatgtgtgtagGAGGCTAAATCTAATCTCCTGGTTTCCacatactaaaaacaaaacaaaaactcaggCTTGTGGTGAGAGGAAATCTAGacttacaaaagaaaatataatgattaGAGTTAAATGCTGTATATCAACAAATCAACTATTactaattaaatcaaactaTTTCACTTCTAAAATGGTCCTTCAACTTTTACAGtatgaaaatataaagagaattcatatattaaaaataccagTACCTTCCACAGTTCCTTGTGTGCTTTCCTCTAGTACACAGGATGACAGCTGAAAGGATTGCAGGGGACTacagcaggggtagtcaattattttgtatcagggtccaaatttcttggtcaaggtccagacatcagcggggtcacaccttcaaatgaccctttccaacacacacacacacaattctgtgaattagtaatataccccattgcttatatttagtacattcatttgacaatgtacaaacataaaaaagtaaaaagtaaatattaatatcaagcggtttcagaccactttgaattttaattttgtatagattattgtaggcatatagataaacataatagacaCTTTCAAGgattttgtgtctttattaGATTGATTTTCCCCGTTGTCCCACTGcgcactgcacaaaattaatgttgcaaaGTGAGGGCGAAGATGATGAGTAATTCAGGGCCGGGGTCTGGGAGTCCTCACTAAGAAGAttttgggccggattaaatcaaaactttgacccacccgctaatagcaaactacaaacctgttcatcatagcggttacatttatatgtatgtaacaatacatacatacataaataaaatcatgataataagttaattaaaattattctcgcgGTGCAGATTTGGCCCGCGGTCCGCCTGTTGACTACCAGTATCATGACTGGGCAAGATTGGCAGGGGCAGCACTGCAGGGATATTTCTGAGAAAGTGAAATGGAGAAAGGAGACGTTCAAAAAGCACAGACAGTGCTCtgataaaacagaaatgattGTCACTTCATACATGCGAACCAAACATAGAAGtgtaatgttaatttaacaATGGCATCACTTCCACTTTCAGAGACACAGCATTGGGGGTGAAGGAGCAGTAAGGGAAATCTTGTTAAATGCTCCAAAACAAAAGATCAGTGATTGCAACATATCTGTATATACAATTGCAAAATAAAGTGAAGAGATAGGTGCAAACTCTGGTGGACAGAAAAGAAAGACTAGAGACTTCTCTGATCTGGCCACTTTAAATATTAGATGAACACATGACAAGATATCGTGCAGACAAGAAACAAGATGTAGAGTAGCCAGGCAGTATATTTCCTGGAAATCTTGTCTCAGAAAACATTCCCCCTAGTCTCATAACAAATTCCTGATTAATTATCCACACTAAAGTCCCCTCCGGTCCTCATCCCTAAGAATGTAGCTTTCATTTGACTCCTGTTAATTCACCTCAGATAAAGGGTTCAACATACATTGAACTGTTTAATTTACACTGCCGTTGAGTTTTTTCATCAGAGCAAAAGCACATTACTGGATGAAGCCAGGTGATGTTGTCGATCAAAAACTGATTGCAGTCCAGTCTTAATGCTCTTCATCGGAACTACCTTAAATGAATATCTTGGTCTAAATCTGCCTTTATCTcttatggttgttgttttgtgttttttgttttttttgtgttttga

Function

GO: NA

KEGG:

id description
K24470 SNED1, IRE-BP1; insulin-responsive sequence DNA-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69110 lncRNA upstream 169637 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 172672 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 337743 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 419466 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 421670 28380980 ~ 28381299 (+) True G55204
TU69185 lncRNA downstream 61564 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 192906 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 348509 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 350282 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 622009 29458421 ~ 29458743 (+) True G55487
AMCG00009204 mRNA upstream 3369 28767622 ~ 28799600 (+) True AMCG00009204
AMCG00009198 mRNA upstream 40451 28756555 ~ 28762518 (+) True AMCG00009198
AMCG00009200 mRNA upstream 47795 28736283 ~ 28755174 (+) True AMCG00009200
AMCG00009201 mRNA upstream 67116 28729396 ~ 28735853 (+) True AMCG00009201
AMCG00009199 mRNA upstream 79179 28676597 ~ 28723790 (+) True AMCG00009199
AMCG00009203 mRNA downstream 31174 28867586 ~ 28893044 (+) True AMCG00009203
AMCG00009206 mRNA downstream 73901 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009207 mRNA downstream 145917 28982329 ~ 28984320 (+) False AMCG00009207
AMCG00009202 mRNA downstream 177980 29014392 ~ 29019892 (+) True AMCG00009202
AMCG00009214 mRNA downstream 238669 29075081 ~ 29102077 (+) True AMCG00009214
TU69158 other upstream 25348 28766454 ~ 28777621 (+) False AMCG00009204
TU68775 other upstream 1185591 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3215359 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3885106 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3986435 24812618 ~ 24816534 (+) True AMCG00009085
TU69199 other downstream 92480 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 267228 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 267228 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 336727 29173139 ~ 29174700 (+) True AMCG00009220
TU69455 other downstream 1071499 29907911 ~ 29911564 (+) True G55573

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_02532545_02564555.mRNA True 4071 mRNA 0.51 29 CI01000340 2532545 ~ 2564555 (+)