RNA id: AMCG00009214


Basic Information

Item Value
RNA id AMCG00009214
length 2472
RNA type mRNA
GC content 0.54
exon number 20
gene id AMCG00009214
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29075081 ~ 29102077 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAACCGCTCAGAGGGAGGGAAGATCCCGAGACAAATGGAGAGAAGAATCCAGCCCCGGAAGTAACTGTTGCGGTTCCCATTCTCCGAGAGCTGCTTACAGATCTGACAGTAGATCTCATCCCTAGGAGACCGAAACATACCCCAGTCAGCTCTGAGAGAAGCAGGTCTCGTCTGAGAATGGCATATCCTACGATAATATGCAGCTTTTCCAAAGGACTCATCGGTCGATCTAAGAGAGGAATAAATGTAAGTTTCACCACATACCTGCTCGAGCCCAACCAGATTGCTGAGGCGCCGGCCCTGTCGATTCCCCAGGTTCTGTTGGATCGGCTTTTTTCCAATATCCGGTTTCTCCGGAGCCTGCTGCCGGGGCTCAGGAATATCACCCATGAACCTCAGGATGATCCACCAAACCGTGACCACGGCAATGGGCCTGCAGCAGAGTCACAGCTGTCCTCATCTGCTGATAGCGGTGGGCGAGCTGCCGACTGCGGCACTGAGCCTGCAAGCGAGCGAAGCCCAGCTGGACCTGGGAGCAGGGAGAAGATAGTCTATAACAACCTGAATGATTGCATCATTGGGCTTCAGGCAGCGGATGAAGTAAGGCTGGCAGACGGTAAGTGTCTTCATGAGGGAGTCAAGAGACTGGCGGAACTGGCCACTGAGGCTGAGAGGTTTGGAGACACTCTCTACGTTGGTCATGAAGGAGCGGTTTGTCAAGCTGGCTTCCAGAGGTTTGGCATTCACCTGATGCAGGAGAGCAGCAAGCAGTTTGGTGATTTCCCAGTAGTCGTTATCACTGAACGCAAGGATCTTCATGGCCGAGCGTATGTGGGCATACTCCTTTATGTCATCCCGCCCTTCACAGCTGCACTGGTCTCGGCGATTGCGGTGCATGTTGAAGAAACAGCTGTCGGCAATGGCAAAGACGTGAGGAGGAAGCTCTCCGAGGCGCTTCTTGGACACTTTCTTGGTCCCACCGTTCTTGTTCAACAGCTTCATGACACGTTCCTTGTGGTCCAGGACCTTCATCATAGCATCACGAGCTTCAGTGATTTGATCCATTACCAGCTTACAGCGCTGCATGTTACCCTGTCAGGACAAAGGAAGACTCACCTGTATGAGCTCATTGATACAGTGCAGATCGTCATCTGCACCAGCCTTCTTTTTTGGGATCAGCCCCTCCTGGAGCGTGAAAGCGGTCGTGCCGTTGACTTCTCTTCATCGGTGCTGTTGGTCTCCATCATCTCACTTTCCTCTGTAGAGATGACATGCTGTTGTTTCCTTGGCTTCTTCCTGGGGGAGGCACCTGGTAGCATGTCTCCTGTAGAAGGCCCAAGGGAGTTCACAAGCGGGGCCACAACATTGGCCATCGATGCAGGGATTGGTGGGGTGACCGCCATGGCTGCTGGGATTGCAGACAGAGCGGCAGTGGGCTGCGAAGGAGGTGCTGCCGCCGTTAAGATGGCCGGGATTGCCTGTGAGGGGTGCTGGACAGGGGAGGGGACAGCTTGTTGCTCTGTGCTCTGGCTGGATAACGCTTCCACTGCGGCAGTCACAGGAGGAGTTATGGCAACGTGGATCTCCGGTTTTGATTTTGCCCTGAAACCACAGAGGTTCAGTATAGTGCTGTGCAGCTCAGCTCTTACCCTGCAGGCCGAGGTGATCCCGAAGCACTCCTTATGCCACTCTCCATCCGAGGGCTCGTCGCTTCACTCGCCTGGGGTGGAATTAGtttgctgctgctgctgcgagCTGATTGGTGCTGGCTGGATGCCCTGGGTGCTGATTGGTGCTGAAGTGCTGGCTGAATACCTTGTGCTCCCATTGCTGCCGGCTGGATCCCCTGGGTGCCAATCGGGGCGGTTTGTAGGCCGATGCGatctTGCAGAGAAGTTCTGTTACCTGTGTCATAGTGTGGAGCTGTGGCTTCTGGCAGGGCAGATTGATGCGAGCAGCCGTGTCTCTAGACTGGGGCTGCCGCTGGATGCTAATAGTGGCAGCGGTTACAGCTGGCCCTGGCAGTACCTGGATGTGTGGCTGGTGGATGATGTGCTGTCCCACCCCAGCATTGGGACCAGTGGCTGGCCTCAAGACTGTGCACCAATATCAGTCAACAAAGCCAAACAATTCTCAACATCAACGCGCAACTTAAAAAACACTCTTGTCAATGGTATTGTGCAAAGTAAGGTCATTCACAGAGTAGAGCAGGTCCATTCTCGTACCTGCTGTCCACTGATGGTGGCGACCGGAATAGCAGACGTGGCAGAGCTCCCTGGGCAGTGGAAGTGTGATCACGTGGATTGTGGCCTGAATCCCGGCAGCCTTCCTCACTCCCACCTGCGAACTGATTTCCAGGGACTAGGCTGGGATTTGTCCCTGGCATCTGAGATTGTCCCAAAGCAGAGGCTGGGACTCCAGACCTTGGAAACTGCTGAGAGCTCATCCTTTGACACAGATATACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69229 lncRNA upstream 43603 29029318 ~ 29031478 (+) True G55394
TU69185 lncRNA upstream 176388 28897976 ~ 28898693 (+) True G55357
TU69110 lncRNA upstream 441749 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 444784 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 609855 28464562 ~ 28465226 (+) True G55257
TU69310 lncRNA downstream 82844 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 84617 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 356344 29458421 ~ 29458743 (+) True G55487
TU69374 lncRNA downstream 539412 29641489 ~ 29641936 (+) True G55512
TU69445 lncRNA downstream 756218 29858295 ~ 29932152 (+) False G55564
AMCG00009202 mRNA upstream 55189 29014392 ~ 29019892 (+) True AMCG00009202
AMCG00009207 mRNA upstream 90761 28982329 ~ 28984320 (+) False AMCG00009207
AMCG00009206 mRNA upstream 148253 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009203 mRNA upstream 182037 28867586 ~ 28893044 (+) True AMCG00009203
AMCG00009205 mRNA upstream 238669 28802969 ~ 28836412 (+) True AMCG00009205
AMCG00009208 mRNA downstream 1531 29103608 ~ 29108227 (+) False AMCG00009208
AMCG00009220 mRNA downstream 69246 29171323 ~ 29174731 (+) False AMCG00009220
AMCG00009221 mRNA downstream 206779 29308856 ~ 29309773 (+) True AMCG00009221
AMCG00009218 mRNA downstream 264561 29366638 ~ 29402226 (+) True AMCG00009218
AMCG00009219 mRNA downstream 314359 29416436 ~ 29419290 (+) True AMCG00009219
TU69199 other upstream 63313 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 297460 28766454 ~ 28777621 (+) False AMCG00009204
TU68775 other upstream 1457703 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3487471 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 4157218 24915029 ~ 24917863 (+) False AMCG00009088
TU69266 other downstream 1563 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1563 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 71062 29173139 ~ 29174700 (+) True AMCG00009220
TU69455 other downstream 805834 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 893049 29995126 ~ 29995438 (+) True G55591

Expression Profile