RNA id: AMCG00009223


Basic Information

Item Value
RNA id AMCG00009223
length 402
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00009223
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29528879 ~ 29529494 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACCCCTGGCTTGTAACATTCGTCTCAttgagattgtttttctttctctctgtaatgGCAGATTGAGAGATCCGTCAGCCTGCTTCTCGTGGACAGAGAGCTCATTCCTTACCTCCATGTCTCAGTCCCAGTCATCACAGGCCAGTGACATCTTCAGCCAGGATGTCTTCAACCAGCTCCTGGGAATGCTGGACCAGTCTGCCTTTCATACAGTTCAGCCAATTGAGCTGAACTTCTCGGAGAGCCCAGTGCACGGTGCTGCAGGCAACACCATCCAGATCAGCATGGACTGCATTACCATGCACGACCGCGACAAGGAGGAACCCTGCGGGGTGAGTATGAATATCGGCACCGCTGAGCCCCTTGAGCCCCAGGGCCGGCCTAGagtttacacaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69342 lncRNA upstream 70136 29458421 ~ 29458743 (+) True G55487
TU69312 lncRNA upstream 340924 29186694 ~ 29187955 (+) True G55463
TU69310 lncRNA upstream 343695 29184921 ~ 29185184 (+) True G55461
TU69229 lncRNA upstream 497401 29029318 ~ 29031478 (+) True G55394
TU69185 lncRNA upstream 630186 28897976 ~ 28898693 (+) True G55357
TU69374 lncRNA downstream 111995 29641489 ~ 29641936 (+) True G55512
TU69445 lncRNA downstream 328801 29858295 ~ 29932152 (+) False G55564
TU69444 lncRNA downstream 400281 29929775 ~ 29932152 (+) True G55564
TU69469 lncRNA downstream 446109 29975603 ~ 29976267 (+) True G55586
TU69479 lncRNA downstream 464128 29993622 ~ 29994641 (+) True G55595
AMCG00009224 mRNA upstream 41724 29484543 ~ 29487155 (+) True AMCG00009224
AMCG00009225 mRNA upstream 58355 29461485 ~ 29470524 (+) True AMCG00009225
AMCG00009219 mRNA upstream 109589 29416436 ~ 29419290 (+) True AMCG00009219
AMCG00009218 mRNA upstream 126653 29366638 ~ 29402226 (+) True AMCG00009218
AMCG00009221 mRNA upstream 219106 29308856 ~ 29309773 (+) True AMCG00009221
AMCG00009222 mRNA downstream 33614 29563108 ~ 29573053 (+) True AMCG00009222
AMCG00009227 mRNA downstream 119123 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009226 mRNA downstream 187533 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009231 mRNA downstream 329431 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009237 mRNA downstream 479308 30008802 ~ 30009842 (+) True AMCG00009237
TU69299 other upstream 354179 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 421971 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 421971 29103640 ~ 29106908 (+) False AMCG00009208
TU69199 other upstream 517111 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 751258 28766454 ~ 28777621 (+) False AMCG00009204
TU69455 other downstream 378417 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 465632 29995126 ~ 29995438 (+) True G55591
TU70069 other downstream 2632266 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 4471302 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 4486176 34015670 ~ 34018815 (+) True G56369

Expression Profile