RNA id: AMCG00009225



Basic Information


Item Value
RNA id AMCG00009225
length 462
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00009225
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29461485 ~ 29470524 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCTGAGGGAGATGAGAGTACGTTTAAAGCAGTTGAGCTGGCCGAAGAAGCCCAAGAGGCAGTGCCCACCGAAAAACTCGATCCAGGACTGAGCGAATCGAACCAGCTGAAGACTGCTGGCCCAAACCCCAGCACTGGGCAGAACCCAGAGAGCAAGAAGGAACTGTTGGAGCAGTATAAGATGAGGAGATTTTTTGTCCTCAGgCCTGGTGCTTTTGAGCAAGCCATTGAAgacatccagtcactggtcgaCAAAGAAGAAGATGGCACCGTTCAGAGTGTATGGCTGTTGGCAGAAGTGGATCACTGGAACAACGAGAAGGAGCGCATCGTCCTGATCAATGACCACTCTCTCCTCATCGGCAAATACGACTTCATGATGCTCAAGTGTGAGCAGGTGCAACGGATCCCTCTGAACCTTATAGACCGCGTCTGTCACGGCGCCTTCTCCTTCCCTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69342 lncRNA upstream 2742 29458421 ~ 29458743 (+) True G55487
TU69312 lncRNA upstream 273530 29186694 ~ 29187955 (+) True G55463
TU69310 lncRNA upstream 276301 29184921 ~ 29185184 (+) True G55461
TU69229 lncRNA upstream 430007 29029318 ~ 29031478 (+) True G55394
TU69185 lncRNA upstream 562792 28897976 ~ 28898693 (+) True G55357
TU69374 lncRNA downstream 170965 29641489 ~ 29641936 (+) True G55512
TU69445 lncRNA downstream 387771 29858295 ~ 29932152 (+) False G55564
TU69444 lncRNA downstream 459251 29929775 ~ 29932152 (+) True G55564
TU69469 lncRNA downstream 505079 29975603 ~ 29976267 (+) True G55586
TU69479 lncRNA downstream 523098 29993622 ~ 29994641 (+) True G55595
AMCG00009219 mRNA upstream 42195 29416436 ~ 29419290 (+) True AMCG00009219
AMCG00009218 mRNA upstream 59259 29366638 ~ 29402226 (+) True AMCG00009218
AMCG00009221 mRNA upstream 151712 29308856 ~ 29309773 (+) True AMCG00009221
AMCG00009220 mRNA upstream 286754 29171323 ~ 29174731 (+) False AMCG00009220
AMCG00009208 mRNA upstream 353258 29103608 ~ 29108227 (+) False AMCG00009208
AMCG00009224 mRNA downstream 14019 29484543 ~ 29487155 (+) True AMCG00009224
AMCG00009223 mRNA downstream 58355 29528879 ~ 29529494 (+) True AMCG00009223
AMCG00009222 mRNA downstream 92584 29563108 ~ 29573053 (+) True AMCG00009222
AMCG00009227 mRNA downstream 178093 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009226 mRNA downstream 246503 29717027 ~ 29742605 (+) True AMCG00009226
TU69299 other upstream 286785 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 354577 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 354577 29103640 ~ 29106908 (+) False AMCG00009208
TU69199 other upstream 449717 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 683864 28766454 ~ 28777621 (+) False AMCG00009204
TU69455 other downstream 437387 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 524602 29995126 ~ 29995438 (+) True G55591
TU70069 other downstream 2691236 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 4530272 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 4545146 34015670 ~ 34018815 (+) True G56369

Expression Profile